Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1486 ATGGACAAGCACAAGTGCAAGCTTTGCTTCAAGAGCTTCTCCAATGGGAGAGCCCTGGGGGGTCACATGCGCTCTCACATGATGAACCTTCCTCTCTCGAAGCCCGAAGAAGCGTCACCGCGAACCATCCAACTCAGCTTCGAAGCCGATTCAGCTTCTTCTTCATCTTCCTCGTCATCCGATGATGACGACGACGGTGACAAGGGTCTCTGTTACGGCCTCAGAGAGAACCCCAAACGAAGCATTCGCCTTGTGGATCCCGAATTCTCGTTCGCAGCTGCAGACACTGGCTCCGCGATCCTCCATGACAGAGAGAGCGAGTCCGAGTCATCCAAAAGCAACCCAACTCGTAAACGATCCAAAAGGCCATGGAATAATAATAATAACAACAACAACAATTATTATTATTTTAATGATAATAATAATAATGATACTAACAACTATACCACCCCCAGCATGAAGAAGCAGGTTTTCGGAACCGAACATGAAGCCCTGATGAAGAAGAAGAGTAAGACAGAATCGTGGGTGGACCACGAACCTGCGAGCTCGGTTTCCGAAGCAACGACCGAGGAAGACGTGGCGTTTTGTCTGATGCTGCTTTCGAGGGACAAATGGAAGCGACATAAGGAGCAGCCGCAATTCGTGGAGGTGGAAGATCAATACGAGGAAGAGGAGGAGGAGGAGGAAGAGGAGGAGGACGAAGCGTTTGAGGAGAGCGAGGAATCTCAAGAGACAATGAAACTGTGCAAAAACCGAGTACGAGGAAGGTACAAATGCGACACGTGCAACAAGGTGTTTCGATCGTACCAAGCGTTGGGGGGCCACCGAGCGAGTCACAAGAAGATCAAAGTGAACGTGAAAATGGACGGTGAAGAAGCGGAAGTTGAGCACAGGAAGAAGAGTGGAACGTGTGGCGTGGAGAAGAAAATCCACGAGTGCCCCGTATGTTTCAGAGTCTTCGCTTCGGGTCAAGCACTTGGGGGACACAAGAGAACCCATGTTACTGGGTCAGCACCTGCAACAGTTCCATCAACTTCAGCAAAGTTTGGAAACAGCTTCATAGATCTCAACCTTCCGGCTCCGATTGACGAAGACGAGGCTAGCCAAATCGAGAACTCTGCTGTGTCGGATGCAGAATTCGTCAAAACCCGATAG 1155 0.4987 MDKHKCKLCFKSFSNGRALGGHMRSHMMNLPLSKPEEASPRTIQLSFEADSASSSSSSSSDDDDDGDKGLCYGLRENPKRSIRLVDPEFSFAAADTGSAILHDRESESESSKSNPTRKRSKRPWNNNNNNNNNYYYFNDNNNNDTNNYTTPSMKKQVFGTEHEALMKKKSKTESWVDHEPASSVSEATTEEDVAFCLMLLSRDKWKRHKEQPQFVEVEDQYEEEEEEEEEEEDEAFEESEESQETMKLCKNRVRGRYKCDTCNKVFRSYQALGGHRASHKKIKVNVKMDGEEAEVEHRKKSGTCGVEKKIHECPVCFRVFASGQALGGHKRTHVTGSAPATVPSTSAKFGNSFIDLNLPAPIDEDEASQIENSAVSDAEFVKTR* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1486 384 SUPERFAMILY beta-beta-alpha zinc fingers 256 333 IPR036236 -
Pvu8g1486 384 MobiDBLite consensus disorder prediction 100 116 - -
Pvu8g1486 384 Pfam C2H2-type zinc finger 311 333 - -
Pvu8g1486 384 Pfam C2H2-type zinc finger 256 281 - -
Pvu8g1486 384 Pfam C2H2-type zinc finger 4 27 - -
Pvu8g1486 384 SUPERFAMILY beta-beta-alpha zinc fingers 3 31 IPR036236 -
Pvu8g1486 384 MobiDBLite consensus disorder prediction 217 240 - -
Pvu8g1486 384 ProSitePatterns Zinc finger C2H2 type domain signature. 313 333 IPR013087 -
Pvu8g1486 384 Gene3D Classic Zinc Finger 254 333 - -
Pvu8g1486 384 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 346 - -
Pvu8g1486 384 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 347 382 - -
Pvu8g1486 384 MobiDBLite consensus disorder prediction 32 74 - -
Pvu8g1486 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 257 284 IPR013087 -
Pvu8g1486 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Pvu8g1486 384 SMART c2h2final6 4 26 IPR013087 -
Pvu8g1486 384 SMART c2h2final6 311 333 IPR013087 -
Pvu8g1486 384 SMART c2h2final6 257 279 IPR013087 -
Pvu8g1486 384 Coils Coil 214 245 - -
Pvu8g1486 384 MobiDBLite consensus disorder prediction 44 59 - -
Pvu8g1486 384 MobiDBLite consensus disorder prediction 365 384 - -
Pvu8g1486 384 MobiDBLite consensus disorder prediction 120 135 - -
Pvu8g1486 384 ProSitePatterns Zinc finger C2H2 type domain signature. 259 279 IPR013087 -
Pvu8g1486 384 MobiDBLite consensus disorder prediction 100 135 - -
Pvu8g1486 384 MobiDBLite consensus disorder prediction 369 384 - -
Pvu8g1486 384 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 347 382 IPR044303 GO:0006355
Pvu8g1486 384 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 346 IPR044303 GO:0006355
Pvu8g1486 384 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Pvu8g1486 384 MobiDBLite consensus disorder prediction 215 245 - -
Pvu8g1486 384 ProSiteProfiles Zinc finger C2H2 type domain profile. 311 338 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1486 Pvu-Chr8 26243012 26244166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1486 1 370 C2H2 Transcription Factor Family AT3G60580 40.957 8.75e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu8g1486 zf-C2H2_6 3e-13 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1486 - - vra:106780254 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1486 8 26243012 26244166 Pvu8g1486 8 26243012 26244166 ECH
Pvu8g1486 8 26243012 26244166 Pvu10g0740 10 19145148 19147366 PCT