Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1462 ATGGGACTGGGGAAGACTTTGCAAGCTATCTCCTTTTTAAGCTATTTAAAAGTGTGCCGGTTGTCTGATGGGCCATTTTTGGTTATATGCCCTCTAAGTGTGACTGAGGGTTGGGCGTCAGAGATAGTCAAATTTACCCCCAAACTAGAAGTCTTCAAATATGTTGGTGATAAAGAAAATAGGTGCAATCTACGCAAGAAAATGCATGAACATGTAACAACACAGCCATCAACGATGAATGTCTTGTTGCCTTTTGATGTGCTATTAACTTCATATGACATTGCACTGATGGATCAGGATTTTCTTTCTCAAATACCATGGCAGTATGCAATCATTGATGAAGCTCAAAGACTTAAAAATCCATCTAGTGTTATATTCTACGAACAAGATTGGAATCCTCAGGTGGACAAGCAAGCTCTGCAGAGAGCACATAGAATTGGCCAGATGAACCATGTGTTGTGCATAAACCTTGTTACAGAGAAGACAGTAGAGGAAGTAATTATGAGGAGGGCAGAGAGAAAATTGCGTCTAAGCATCAATGTTATTGGTGATAACATTCTCAAACATGACGATGAAGAAACATCTGATGTTGGAACTGGTGATTTGAAATCCATCATATTTGGGTTACATATGTTAGATCCCAGTGAGATCATTGATGGAAATCATGGGGATATAAACTTACCAGAAATTAGTCTTATGGCTGACAAGGTGCTTGCCTTGCGTGGAGAACAAATACTTGAGAAGGATGAAAGGAAATTTGAGGTCAATCCAAGAATCATTTTACAAGGTCATGATGTTAAGGAAGGAGGTACTACTTCTCTCTCTCATGATCTAGGTCTTGACGAGGCTTCATATCTTTCTTGGGTTAAAAATTTTGAGGAAGTGTCTAAGTCAAGTTGCAACTCAATGATGGACTGGAGGAGCAGAAGAAACCTAGAAGAGGAAAAGAATCTAAAACTTGAGTCTGCAAGGAAGAAGGCAGAGGAAAAGAAGCTATCTAGGTGGAAAGCTCTTGGATATCAATCGTTGAATGTAAAAGACACTCTCACCCAAACAGACAATGACATCACATCAGCTACTGGGTCAGTTCATTTTGTGTATGGAGATTGTACAGCTCCATCAAATGTTTGTTCATCTGAACCTGTTATGATTTTCAGTTGTGTTGACACCTCTGGACATTGGGGTCACGGTGGAATGTTTGATGCACTGTCCAAACTTTCTACAAGCATTGGTGATGCATATGAACAGGCTTCTGAACATGGGGATCTGCATCTTGGTGATCTGCATCTTATAAGGCTTGATGATGGCTGTGAAGAACAAGATATGGATGGAAATACTCCCAAGATTGTTGCTTTAGCTGTGGTTCAGTCATATAATCTAAGGCGCAAAATTCCACGAAGTGAAATCTCACTTCCCCATTTGGAAAGCTGCTTATCAAAGGCAGCATTCTCAGCCGCTCAGAATTCTGGTAACATGCTTCCACATTTACTTAATTAA 1497 0.4001 MGLGKTLQAISFLSYLKVCRLSDGPFLVICPLSVTEGWASEIVKFTPKLEVFKYVGDKENRCNLRKKMHEHVTTQPSTMNVLLPFDVLLTSYDIALMDQDFLSQIPWQYAIIDEAQRLKNPSSVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEKTVEEVIMRRAERKLRLSINVIGDNILKHDDEETSDVGTGDLKSIIFGLHMLDPSEIIDGNHGDINLPEISLMADKVLALRGEQILEKDERKFEVNPRIILQGHDVKEGGTTSLSHDLGLDEASYLSWVKNFEEVSKSSCNSMMDWRSRRNLEEEKNLKLESARKKAEEKKLSRWKALGYQSLNVKDTLTQTDNDITSATGSVHFVYGDCTAPSNVCSSEPVMIFSCVDTSGHWGHGGMFDALSKLSTSIGDAYEQASEHGDLHLGDLHLIRLDDGCEEQDMDGNTPKIVALAVVQSYNLRRKIPRSEISLPHLESCLSKAAFSAAQNSGNMLPHLLN* 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1462 498 Gene3D - 1 120 IPR038718 -
Pvu8g1462 498 Gene3D - 121 210 IPR027417 -
Pvu8g1462 498 PANTHER HELICASE CHR10-RELATED 1 124 - -
Pvu8g1462 498 PANTHER HELICASE CHR10-RELATED 124 492 - -
Pvu8g1462 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 126 IPR027417 -
Pvu8g1462 498 Gene3D Leucine Aminopeptidase, subunit E, domain 1 359 494 IPR043472 -
Pvu8g1462 498 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 1 124 - -
Pvu8g1462 498 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 124 492 - -
Pvu8g1462 498 SUPERFAMILY Macro domain-like 363 488 IPR043472 -
Pvu8g1462 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 122 197 IPR027417 -
Pvu8g1462 498 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 126 IPR014001 -
Pvu8g1462 498 Pfam SNF2-related domain 1 124 IPR000330 GO:0005524|GO:0140658
Pvu8g1462 498 Coils Coil 310 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1462 Pvu-Chr8 24531061 24545261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1462 115 206 RAD5 or RAD16-like Gene Family AT1G02670 34.783 2.59e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu8g1462 SNF2_N 1.6e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1462 K20092 - gmx:100797182 575.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1462 8 24531061 24545261 Pvu8g1462 8 24531061 24545261 ECH