Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1458 ATGGGGAGTATGAGTGACTCAGACCGAAAACGACGTCACTTTAGCTCCTTGTCTCCAACACCTGCAGCTGCTACTGCCAAGAAGCTACCCTTCTTGCCCGTTTCTGAAGACAAAAAGCTTGATATTGTTGTACTTCAGTATCAAAATCAAAAGCTTATACAAAAATTAGAAACTCAGAAGTTAGAGTATGCAGCTCTTGAGAATAGGTTTACTCAACAGAACGATAGACAAAAGTCATATGATCCCACTTTATCAGTGGTCAAGAAATCTTGGGAGCAGATGGTTAATGATTTGGAGTTGTGTTCTGAACAAATGAGAGAGTCACGTGGCAATAGATTTGCATCAATCATGAAAGATGGTGGTCCATCAACTGTTCAAGGTGTGTTTCTTAGCCGTCTAATGCAAACTAGTGCAACTGAATGTGCAACTGCATATAGCTATGCAAACCAGATGGAAGAGCATCGAGAAATTATTACTGAAAAAACTAAAAACATTTTAAAGAATATGGCAACAGCTGTTAATAATCTTTGGGTTCTGATGGATGGATTGCATACTGAATTACTGAAAAAGGTTCCTGTAGATGATTTTTGTAGGCAGAAATTGTCCTCTGATCTAGATGTGAAAGTTAAAAACTTGAGATTGGAATTCAGTGAACTTCATTTAAAGCACAAGTCTCTATCAAGTGAATTCCAAATTCAGCGAGATATTGATGCAAAATATAAAGCTGACCTTGAAAGATTAAAAGGGGAACTGGCTAGCGCTGTTGCAGAGTTAGAAGAAAGCAATCACAAACTTGCAGCTCTTAAGGCTGAGAGAGATGCTGCAAAAGGGGCAGTTCTCCCTGTCTTAAATGTTGGCAGTACGCATATTCCTAGTGATAAGATCAGAGACAAGCAAAAGGACTTGCAAGATATGGAATCTACTTTGAAGGATCTACTGGACCAAGGTTCTACTCGATTAATGGAACTGAAAAGTCTTCATGAGGAAAGAATAAGAATATTACAGCAGTTGTGTGATCTACAGAACACTTTGAAGAATTTCAAGTGTATTACTTCATCCCATGCTTACCAATTGGCTAGAGATCAGATAGAAAAGTCAAAATCAGATGTTCTGGAGTATCAGGCCTTATATGAGAAACTACAGGTTGAAAAGGATAATCTTACATGGAGGGAGCGAGAGTGGTACATTAAAAATGATTTAGCAGATATTTTTCAAAGATCTGTGGCTGTTTCAGATTTTAGAGTGGCTGATCTACACTCTGAGATACAGAAAAAGATAGAGGAAGGAAATATGATTGAAAATAAGCTGAAAGAAGAAGCAAGAGAGCCAGGAAGGAAACAAATTATTGCTGAATTTAAATCTCTGGTTTCTTCGTTTCCTGAAGAAATGGGGTCTATGCAAAGCCAACTAAGAAAATATAAAGAATCAGCTTCAGACATCCATTCTTTGCGTGCAGATATGCAGTCTGTTTCTAATATTCTTGACAGGAAGGTAAAAGAATGTGATGCATTTTCTGTTAGGTCTGCCAGTCAACTTGCTGAGATAAAGAGGCTGCTTGGTGTGTTTCAAGATTTGAGAGAAAGTGAACTGGACTTGAAGTTGACGTTAGAAATGTTTAGACGTGAGTCCATTGATTCAAGGGATGTCATGGATGCACGCGAAGCAGAATATAGAGCCTGGGCACATGTTCAAAGTTTGAAATCATCACTTGATGAGCACAACTTGGAACTTCGAGTTAAGAAAGCCAATGAAGCAGAGGCCAGATCACAACAAAAGCTGGCTGCTGGTGAAGCTGAGATTGCGGACATGAGACAGAAATTAGAAGATTCTAAAAGGAAAATGTGTGATCTGTCGGATGTCTTGAAATCTAAGAACAAACAAAATGAGAACTACTTATCTGAAATAGAGAGTATTGGACAAGCATATGATGACATGCAAACTCAAAACCAACATCTGCTGCAGCAAATTACTGAAAGAGATGATTACAATATTAAGCTTGTTTTGGAGGGTGTACGGGCAAGGCAGAAGCAGGATTCTTTGCTCATGGAGAAGCGGGTAATTGAACAAGATATCCAGCAAACAAACACATCCCTGAATTTATATGATATGAAAGCTGCAAGAATTGAAGACCAGTTGAAGTTTTGTTCAGATCAGCTTCAAAGAATGTCAGACGATAAGTTTCAATGTTCTGTCACTTCAGAAAATACACAAAGAAGGCTGTCTGATATTAGAAAACAAACTCAACAGATTAGGGATACAGTGGTCGAAATGCAATCAAAAATTGGTAGTAATAGGGTGACGAGAATGGAGTTACAAGTTGAACTTGAGAAAGAAAGGTTTGCCAAAAAAAGAATAGAGGAGGATCTGGAGATTTCTAGGAGAAAGTTTTCACGCCTTAAAGAACAAAATGAGGGCTCTTCAATAACTGAAAAGCTTCATCAGGAACTTGAAGAGTACAGGGAAATTATCAAGTGCAGTATCTGTCATGATAGGGCAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTCTGCTACTCATGTATCCAGAAAGTTGCTGGGAGTAGGCATCGCAAGTGCCCACAGTGTGCTACAAGCTTTGGCGCTAATGATGTGAAGTCTGTTTATTTGTAA 2634 0.3853 MGSMSDSDRKRRHFSSLSPTPAAATAKKLPFLPVSEDKKLDIVVLQYQNQKLIQKLETQKLEYAALENRFTQQNDRQKSYDPTLSVVKKSWEQMVNDLELCSEQMRESRGNRFASIMKDGGPSTVQGVFLSRLMQTSATECATAYSYANQMEEHREIITEKTKNILKNMATAVNNLWVLMDGLHTELLKKVPVDDFCRQKLSSDLDVKVKNLRLEFSELHLKHKSLSSEFQIQRDIDAKYKADLERLKGELASAVAELEESNHKLAALKAERDAAKGAVLPVLNVGSTHIPSDKIRDKQKDLQDMESTLKDLLDQGSTRLMELKSLHEERIRILQQLCDLQNTLKNFKCITSSHAYQLARDQIEKSKSDVLEYQALYEKLQVEKDNLTWREREWYIKNDLADIFQRSVAVSDFRVADLHSEIQKKIEEGNMIENKLKEEAREPGRKQIIAEFKSLVSSFPEEMGSMQSQLRKYKESASDIHSLRADMQSVSNILDRKVKECDAFSVRSASQLAEIKRLLGVFQDLRESELDLKLTLEMFRRESIDSRDVMDAREAEYRAWAHVQSLKSSLDEHNLELRVKKANEAEARSQQKLAAGEAEIADMRQKLEDSKRKMCDLSDVLKSKNKQNENYLSEIESIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQKQDSLLMEKRVIEQDIQQTNTSLNLYDMKAARIEDQLKFCSDQLQRMSDDKFQCSVTSENTQRRLSDIRKQTQQIRDTVVEMQSKIGSNRVTRMELQVELEKERFAKKRIEEDLEISRRKFSRLKEQNEGSSITEKLHQELEEYREIIKCSICHDRAKEVVITKCYHLFCYSCIQKVAGSRHRKCPQCATSFGANDVKSVYL* 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1458 877 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 806 877 IPR013083 -
Pvu8g1458 877 Coils Coil 705 725 - -
Pvu8g1458 877 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 1 877 - -
Pvu8g1458 877 Coils Coil 363 383 - -
Pvu8g1458 877 MobiDBLite consensus disorder prediction 1 15 - -
Pvu8g1458 877 ProSiteProfiles Zinc finger RING-type profile. 825 863 IPR001841 -
Pvu8g1458 877 Coils Coil 295 315 - -
Pvu8g1458 877 Coils Coil 241 278 - -
Pvu8g1458 877 CDD RING-HC_BRE1_like 823 864 - -
Pvu8g1458 877 SMART ring_2 825 863 IPR001841 -
Pvu8g1458 877 Coils Coil 593 613 - -
Pvu8g1458 877 PANTHER RING FINGER PROTEIN-RELATED 1 877 IPR013956 GO:0004842|GO:0010390
Pvu8g1458 877 SUPERFAMILY RING/U-box 817 875 - -
Pvu8g1458 877 ProSitePatterns Zinc finger RING-type signature. 840 849 IPR017907 -
Pvu8g1458 877 Coils Coil 563 583 - -
Pvu8g1458 877 MobiDBLite consensus disorder prediction 1 22 - -
Pvu8g1458 877 Pfam Zinc finger, C3HC4 type (RING finger) 824 865 - -
Pvu8g1458 877 Coils Coil 768 802 - -
Pvu8g1458 877 Coils Coil 49 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1458 Pvu-Chr8 23991007 24011515 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1458 825 876 C3H Transcription Factor Family AT2G42030 37.736 6.51e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1458 K10696 - gmx:100790337 1461.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1458 8 23991007 24011515 Pvu8g1458 8 23991007 24011515 ECH