Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1457 ATGTGCCCTTCACTCATTCTCTGTTCCTCTCTAATCAAACCCCACCCTCTCGCTTTCTTCCTTGGGAAACATATCAACATGGAAAGTGATGCTGGGGAAAACTTGTTTGGCACATTCTTCTCCTCCTCCACATCCATGACCATCTCCATAACAACCCACACCATCTCGTCATCATCGTCATCATCAGCAGCAGCATCACCAACATCTTCTACCTCAAGCTCAAACTCATGCACCAAGCAAGACTCCCAAACAAGTCCTCCAGATGATTCAACACGACCTCAAAATAAAAACACCCCAAATAGCAAGGAACGGAAGAAAAGACAAAGAAATGGCAGTGATAACAAGCACCCCAGTTACAGGGGTGTGAGAATGAGAGCATGGGGCAAATGGGTGTCTGAGATACGTGAGCCTAGAAAGAAGTCAAGAATATGGCTTGGAACATACCCTACAGCAGAAATGGCAGCCAGAGCACACGATGTGGCAACTTTAGCCATCAAGGGTCACTCAGCTTACCTCAATTTCCCCAATTTGGCTCAAGATCTTCCAAGGCCCATCACCACATCTCCCAAGGACATTCAAGCTGCAGCTGCAAAAGCAGCAAGCACTTTCTTTGATGATGATAAGCATTGTGAAGCTGAAAAAGATGAAGAAAACCATGCAGAACAAGCTTCATCTTCAACTCTACGCATGGACAGTACTGAGGCTGAGCAAGTTCAAGCAAAACAAGCTTCATCTTTTACTCTATCCATGGACAATACTCAAGGGTCTTCAACTTCTCACTCTACTGCAGATGATGACACACTGTTTGACCTTCCAGATCTTTTCCCTGATGGAAACAATGGACTTTTCTCCAATTCTTCTTCTTGGCGCTTATGTGCTGTTGATAGTGGATTCAGGCATGAAGAGCAACTTTTGTGGGAGAATTATTAG 930 0.4473 MCPSLILCSSLIKPHPLAFFLGKHINMESDAGENLFGTFFSSSTSMTISITTHTISSSSSSSAAASPTSSTSSSNSCTKQDSQTSPPDDSTRPQNKNTPNSKERKKRQRNGSDNKHPSYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVATLAIKGHSAYLNFPNLAQDLPRPITTSPKDIQAAAAKAASTFFDDDKHCEAEKDEENHAEQASSSTLRMDSTEAEQVQAKQASSFTLSMDNTQGSSTSHSTADDDTLFDLPDLFPDGNNGLFSNSSSWRLCAVDSGFRHEEQLLWENY* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1457 309 MobiDBLite consensus disorder prediction 98 120 - -
Pvu8g1457 309 PRINTS Ethylene responsive element binding protein signature 119 130 IPR001471 GO:0003700|GO:0006355
Pvu8g1457 309 PRINTS Ethylene responsive element binding protein signature 141 157 IPR001471 GO:0003700|GO:0006355
Pvu8g1457 309 CDD AP2 117 177 IPR001471 GO:0003700|GO:0006355
Pvu8g1457 309 ProSiteProfiles AP2/ERF domain profile. 118 175 IPR001471 GO:0003700|GO:0006355
Pvu8g1457 309 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 236 309 - -
Pvu8g1457 309 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 38 234 - -
Pvu8g1457 309 Gene3D AP2/ERF domain 118 176 IPR036955 GO:0003700|GO:0006355
Pvu8g1457 309 SUPERFAMILY DNA-binding domain 118 176 IPR016177 GO:0003677
Pvu8g1457 309 MobiDBLite consensus disorder prediction 55 121 - -
Pvu8g1457 309 MobiDBLite consensus disorder prediction 212 243 - -
Pvu8g1457 309 MobiDBLite consensus disorder prediction 55 97 - -
Pvu8g1457 309 SMART rav1_2 118 181 IPR001471 GO:0003700|GO:0006355
Pvu8g1457 309 MobiDBLite consensus disorder prediction 223 243 - -
Pvu8g1457 309 Pfam AP2 domain 117 168 IPR001471 GO:0003700|GO:0006355
Pvu8g1457 309 PANTHER ETHYLENE RESPONSE FACTOR 38 234 - -
Pvu8g1457 309 PANTHER ETHYLENE RESPONSE FACTOR 236 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1457 Pvu-Chr8 23916631 23917738 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1457 105 305 AP2-EREBP Transcription Factor Family AT2G44940 53.081 3.86e-65 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Pvu8g1457 AP2 1.4e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1457 - - pvu:PHAVU_008G141000g 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1457 8 23916631 23917738 Pvu8g1457 8 23916631 23917738 ECH