Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1449 ATGGAAGCTGTTGGGAATACTTCCTTCATGGTGATACTGAAACCTAGCAACTTAATTACTGGGTATATGGTCCCAGTGAGGAGCTACATCAAACGTCGTGAACAATATATTACTCTTCTTGTTGGGGACAGATCATGGAGGGTTAAATTGATCCATTATCGAAATAATACAGCTTACTTCACAAATTTCTTAGATTTTGCAAGGGAAAACGATTTAAAAGAAGGAGATGCATGCTTTTTCCAACTCATAAACATGGGAGATGACATGGTGTTTAGGGCTACCTTTTGTAAACAGACACTCCTCTCCTCTCGAGTACTAAAAGGCCAATAA 330 0.3879 MEAVGNTSFMVILKPSNLITGYMVPVRSYIKRREQYITLLVGDRSWRVKLIHYRNNTAYFTNFLDFARENDLKEGDACFFQLINMGDDMVFRATFCKQTLLSSRVLKGQ* 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1449 109 SMART B3_2 9 99 IPR003340 GO:0003677
Pvu8g1449 109 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 6 96 - -
Pvu8g1449 109 Pfam B3 DNA binding domain 28 91 IPR003340 GO:0003677
Pvu8g1449 109 CDD B3_DNA 8 97 IPR003340 GO:0003677
Pvu8g1449 109 Gene3D - 3 99 IPR015300 -
Pvu8g1449 109 SUPERFAMILY DNA-binding pseudobarrel domain 5 91 IPR015300 -
Pvu8g1449 109 PANTHER B3 DOMAIN-CONTAINING 6 96 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1449 6 87 REM Transcription Factor Family AT1G49480 28.736 4.09e-08 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu8g1449 B3 3.2e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1449 - - pvu:PHAVU_008G140200g 223.016