Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1448 ATGACTTCAAAACTTAACCAAAGAGATGACTCTCATGGGGGTAGTGCCTCAAAGCCAATCCACTTTTTCAGGATCATGCTCTCCCACAACCTTCTGCATGGAAAACTAAGGCTTCCATCAAAGTTTGTGAGCAAATATGGAAATCACCTACCCAACACAATATTTCTTAAGCTTCCAAATGATGCAGAATGGGAAGTAAAATTGGAGAAAAGTGATGGCAGTGTTTGGTTTCAGCAAGGTTGGAAAGAGTTTGTGGAGTATCACTGTCTAGCTCATGGACACCTTTTGGTTTTCAGATACAATGGAACATCTCATTTTCATGTACTCATCTGTGATATGAGCTGCATGGAAATAGACTACCCTGTCAACAAAGCAAATCAGAAAAGGGTCAGAATTAATAGTGAAGACATTCAACCAGCTAAGACACAGAAACCAACACAGAATGAGAAAAGGTCCGATGAAGATGTCAGAGACCACAAA 480 0.4021 MTSKLNQRDDSHGGSASKPIHFFRIMLSHNLLHGKLRLPSKFVSKYGNHLPNTIFLKLPNDAEWEVKLEKSDGSVWFQQGWKEFVEYHCLAHGHLLVFRYNGTSHFHVLICDMSCMEIDYPVNKANQKRVRINSEDIQPAKTQKPTQNEKRSDEDVRDHK 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1448 160 Pfam B3 DNA binding domain 25 112 IPR003340 GO:0003677
Pvu8g1448 160 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 2 141 - -
Pvu8g1448 160 MobiDBLite consensus disorder prediction 130 160 - -
Pvu8g1448 160 CDD B3_DNA 21 112 IPR003340 GO:0003677
Pvu8g1448 160 SMART B3_2 22 114 IPR003340 GO:0003677
Pvu8g1448 160 Gene3D - 15 115 IPR015300 -
Pvu8g1448 160 MobiDBLite consensus disorder prediction 146 160 - -
Pvu8g1448 160 ProSiteProfiles B3 DNA-binding domain profile. 21 114 IPR003340 GO:0003677
Pvu8g1448 160 SUPERFAMILY DNA-binding pseudobarrel domain 17 114 IPR015300 -
Pvu8g1448 160 PANTHER B3 DOMAIN-CONTAINING 2 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1448 Pvu-Chr8 23466781 23467589 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1448 22 138 B3 DNA Binding Superfamily AT1G49475 33.333 5.05e-24 90.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu8g1448 B3 9.7e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1448 - - pvu:PHAVU_008G140100g 340.887