Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1444 ATGAATCGAGGGGCTCCCATTGCTTGCAGGACGCGTAACAACAAGAGAAAGTTGTTTGAGAATGCTTTACTAATGAGTCGGAAGAGGAAGAAGGCGCGGGAACAAGAAGCTATTTTCTCCAATGGTGTAGGTGCAAGTGTGAAAGTTGAACCTGGGTCCGTCGCTTCGTTGACATCTTCTGCTGCTCTTGCAATGAACTGTGAAATAGTATCGGAACGTGGTTCTCAGCGTCTGGGAGAGCATATGGGCGACCCTATTGTAATCAGTGATGGTGATGATGGCAGTGAGGCTGAAGAGGGGTTGAGGGATCCTGAGAGCGATATATTTTGGGTTAAAGTGGAAAGCAAGAGTGAGGAGGATGAAGGGTCTTTAGTGTTGGGTGATAAAGTTGGGAACTTTGGCGATGATGACTATGGCCGTGAATATGAAAACCCGGTTGCATTGTCGACTGATGAAGATGAGGATGATCATGGTGATTTGCTTGTGTCTTCAACTGAGAGTGAGGATGATGAGACGAGCGATGAAGATTTTCTGGTTACCAATGATGGCGATGATGATGGGTTTGAGACTGAAGACTCAACGAGTGACGACAGTGATGGCGATGATGGTTGTTGTTGTGGTGGTGATGTGAGGGGGGTTCACAGGAAGACGGTGAAGGGTATGGTGAGAAAGATGGAGAGTGATACTGAAAGCAGTGGAATTTGCAAAAGGAAAGGTGAAAGGAAAGGTAATGATCAGGTAGATGAGGAGGAGCAATGGATTGGCGCTGATTGTACTAGTGCGACCTCTAGTAAATCTGAGATTTACAAGAAGGAAGGAAAACATGCAACACATAAACATGAAGCAAAGAGAGTGCAAAATGTCATTGCTGATTTTGAAGTCTGTGGTGTTCACGGGGGAAATTCAGGTTGTTCTCTGCCTTCTGAAGTCCTGGAGAATATGAAAAAAAGTGATAGAGGTGATCAAAGTGCGACATTGCAGCAACAGATAGGAGATTCAACTGTGGTCGAGAAGAGCGGGAGCAAAAAACATATCAATGCCATTGACCGGGTGAATACTGATGTAATTGAAAGAAAAGAGAATCAACACAACAAAGGAACAGGTCTGAGGAGTGTTTCTTTTAGTCCAAAAAACCAAGAGAAGATAGGAGATTCTGCTAAAATTGTAATGGAAAAGGACAAGGAAGGGAAACATAAATATTGGTTTAATAGCAATAACCGTGAGAAGGTCAGGGTGGTGGATGATGAAACTGGTGACAAAGAGTTGCATGAACTCCTAAGGATGCCATCTACATTGAAAAACAAATGTTATAAATTTTTTACTGAATGTTTTATGGGCAAGAGTAATTCGGTTAAGGATGATTCAAATAAGTTGGATGAAAAGGATGATGATGTTGCTGAGGGTCAGACTCAGCCATTAGTTTCTAGGCAGCCAATCCCTTTTCATTGTGGCTTTATGAACGAAGAAGAACCTATAGAAAAGTCAGAGCAAGAGAAGGAGTTAGATGTGTTGTGGGGTGAAATGGATATGTTGCTTCGAGTTGAAGAAATTGGGACCCAGGTTAATAATATAGGGACAAATGAAGCAAGAGAAAACGAAGAAAGTCCAGCCTCGAAGTGCAAGCATGACACTATTTTTAACGAGCAGATTGGAATATATTGTAGATGGTGTGGTTGGATCGAGACTGAAATCAAATATATCACGCCACCATTTGTGGATTCTGAAAGATATGGTGGTAGAAGGGTGGCATCTGATGGAGGTAACATCTCGAAATTGGATAGGGCTCTGTTGAATGAGTATGATGATGACTTGGAGGAAATTTGGTCTCACAATGAAGGCACAGTTTGGGACCTTATTCCTAACATTAAACAAAGCTTGTATCCTCATCAACAAGAAGGGTTTGAGTTTATTTGGACAAACTTGGGAGGAACTATTGACCTCGCCAAATTGAAGACTGTTAACCCATGCAATGAAGGTGGCTGCATTATTTCTCATGCTCCTGGAACAGGAAAGACGAGGTTGACCATGGTGTTTCTTCAGACATATTTGCAATTGTTTCCAAAGTGTCTACCTGTTATCATTGCTCCTTCCAACATATTGCTTACTTGGGAAGACGAGCTGAGAAAGTGGAACTTAGGAATTCCATTCCATAACTTGAACAGTACTGAATTATCAGGAAAGGAACAAGTCATCAATGAAGTTGATTGGTCTGGCAATCAGAGGCAGAATAAGGATGCCATACGGATGGTGAAGTTGTGTTCATGGTACAAAGAGAAGAGCATTCTATTAATCAGCTACAACTTGTATGAGAAGCTAGCAGGGGCCACGTCTGAGGGTGATGGGGAAAAAGATAAGAATAATGGAAAGATCGAGAAAAAGAAACATGCAAGGACAAGGGAGTACATTGAAAGTGGAATGGGAAAGGTTCTGCGTGACTATCCTGGTTTGCTAGTACTTGACGAAGGACACACTCCTCGGAATCAGAATAGTTATATTTGGAAGGTTCTTTCTGAAAGTAGAACTCAGAAGCGAATTCTTCTCTCAGGGACTCCTTTTCAGAACAACTTTTTGGAACTTTACAATATTTTGTGCTTAATGAAACCATCCTTTCCTGACAGCATCCCACAAGAACTCAAGAAGTTTTGCCAAAGTAGACTTATGCACCGAAGGAAAGCATCAAAAGACATGAGTTGGGAACCTGTTTCTTCTCGAAATCCAGCTGATGAAAAAATAAAACAGCTAAATTTGCTGATGAACCCCTTTGTTCATGTTCACGACGGTAGCATTCTTCAGAAGAACCTTCCTGGGTTGAGAGAATGTGTGTTGGTTCTGAAGCCAGACACTTTTCAGCAAGAAACTCTAGAGAGCATTGAATACGCTCAAAACGTTCTAAACTTTGAACACAAGTTGGCCTTGGTCTCAGTCCATCCATCCCTTTTCCTCAGCTGCTCTTTGTCAAAAAAAGAAGAATCCATTGTTGACAAGGGTAAGTTGGAAAAAGTTAGATTGAACCCTTATGCAGGAGTGAAAACCAAATTTCTGATCGAGTTTATAAGACTATGTGATGCAGTTAATGAGAAAGTCCTTGTTTTCAGCCAATTCATTGATACTTTAAACTTAATCAAGGACCAGCTCGAGTCAGCCTTCAATTGGACTTTGGGGATGGAAGTGTTATATATGTATGGCAAGCTTGACCAAAAACAAAAACAGTTCCTCATTAATAGTTTCAATGAAGCAAATAGCCAAGCAAAGGTGTTACTTGCTTCTATAAAAGCATCTTCTGAAGGCATTAGCTTAGTTGGAGCTTCAAGGGTCGTGATTCTTGATGTTGTTTGGAATCCCTCAGTCGAAAGGCAAGCTATTTGCCGAGCATACAGACTAGGACAAAAGAAGGTTGTTTTCACTTATCATCTACTTGCCCAGGGCACCCCTGAATGCACCAAATACTGCAAACAAGCAGAAAAGAACCGGTTATCTGAACTGGTTTTCTCAAATAGAAATGCTGAAAGCGATAAGATCAAGAGAAGGGGAGTAATGCTTGAGGATTTTGAAGATAGAGTTCTTGATCTCCTGGTTCAGCATGAAAAACTCAAGGAGATGATTGGTGAATGTATAATCCAACCTAAGAAGAGAGATTTGGAGATTTTGGGCCCCTGA 3657 0.4148 MNRGAPIACRTRNNKRKLFENALLMSRKRKKAREQEAIFSNGVGASVKVEPGSVASLTSSAALAMNCEIVSERGSQRLGEHMGDPIVISDGDDGSEAEEGLRDPESDIFWVKVESKSEEDEGSLVLGDKVGNFGDDDYGREYENPVALSTDEDEDDHGDLLVSSTESEDDETSDEDFLVTNDGDDDGFETEDSTSDDSDGDDGCCCGGDVRGVHRKTVKGMVRKMESDTESSGICKRKGERKGNDQVDEEEQWIGADCTSATSSKSEIYKKEGKHATHKHEAKRVQNVIADFEVCGVHGGNSGCSLPSEVLENMKKSDRGDQSATLQQQIGDSTVVEKSGSKKHINAIDRVNTDVIERKENQHNKGTGLRSVSFSPKNQEKIGDSAKIVMEKDKEGKHKYWFNSNNREKVRVVDDETGDKELHELLRMPSTLKNKCYKFFTECFMGKSNSVKDDSNKLDEKDDDVAEGQTQPLVSRQPIPFHCGFMNEEEPIEKSEQEKELDVLWGEMDMLLRVEEIGTQVNNIGTNEARENEESPASKCKHDTIFNEQIGIYCRWCGWIETEIKYITPPFVDSERYGGRRVASDGGNISKLDRALLNEYDDDLEEIWSHNEGTVWDLIPNIKQSLYPHQQEGFEFIWTNLGGTIDLAKLKTVNPCNEGGCIISHAPGTGKTRLTMVFLQTYLQLFPKCLPVIIAPSNILLTWEDELRKWNLGIPFHNLNSTELSGKEQVINEVDWSGNQRQNKDAIRMVKLCSWYKEKSILLISYNLYEKLAGATSEGDGEKDKNNGKIEKKKHARTREYIESGMGKVLRDYPGLLVLDEGHTPRNQNSYIWKVLSESRTQKRILLSGTPFQNNFLELYNILCLMKPSFPDSIPQELKKFCQSRLMHRRKASKDMSWEPVSSRNPADEKIKQLNLLMNPFVHVHDGSILQKNLPGLRECVLVLKPDTFQQETLESIEYAQNVLNFEHKLALVSVHPSLFLSCSLSKKEESIVDKGKLEKVRLNPYAGVKTKFLIEFIRLCDAVNEKVLVFSQFIDTLNLIKDQLESAFNWTLGMEVLYMYGKLDQKQKQFLINSFNEANSQAKVLLASIKASSEGISLVGASRVVILDVVWNPSVERQAICRAYRLGQKKVVFTYHLLAQGTPECTKYCKQAEKNRLSELVFSNRNAESDKIKRRGVMLEDFEDRVLDLLVQHEKLKEMIGECIIQPKKRDLEILGP* 1219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1444 1218 SMART ultradead3 622 877 IPR014001 -
Pvu8g1444 1218 MobiDBLite consensus disorder prediction 452 467 - -
Pvu8g1444 1218 Gene3D - 935 1208 IPR027417 -
Pvu8g1444 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 614 895 IPR027417 -
Pvu8g1444 1218 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 652 869 IPR014001 -
Pvu8g1444 1218 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 2 1213 - -
Pvu8g1444 1218 MobiDBLite consensus disorder prediction 120 203 - -
Pvu8g1444 1218 Gene3D - 601 919 IPR038718 -
Pvu8g1444 1218 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1016 1184 IPR001650 -
Pvu8g1444 1218 MobiDBLite consensus disorder prediction 223 249 - -
Pvu8g1444 1218 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 814 1175 IPR027417 -
Pvu8g1444 1218 Pfam SNF2-related domain 642 956 IPR000330 GO:0005524|GO:0140658
Pvu8g1444 1218 MobiDBLite consensus disorder prediction 451 471 - -
Pvu8g1444 1218 MobiDBLite consensus disorder prediction 78 106 - -
Pvu8g1444 1218 SMART helicmild6 1043 1128 IPR001650 -
Pvu8g1444 1218 Coils Coil 1180 1200 - -
Pvu8g1444 1218 Pfam Helicase conserved C-terminal domain 1013 1128 IPR001650 -
Pvu8g1444 1218 CDD SF2_C_SNF 985 1139 - -
Pvu8g1444 1218 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 2 1213 IPR044567 GO:0080188
Pvu8g1444 1218 MobiDBLite consensus disorder prediction 148 203 - -
Pvu8g1444 1218 MobiDBLite consensus disorder prediction 776 796 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1444 Pvu-Chr8 23316139 23320475 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1444 1026 1180 RAD5 or RAD16-like Gene Family AT5G43530 34.839 1.63e-18 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu8g1444 SNF2_N 1.1e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1444 K10875 - gmx:100812737 1530