Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1443 ATGTATCAGGGTGTTCCGGTTGCTTGCAGGACTCGAAGCAATAAGCGTGTGGTCGTCGGGAATGGATTGATAATGTGTCGGAAAAGGAGGAGAAAGGTGGATGAACAGGACGATGAAGTGATTTACTTGGGAGAAAATTTGGAAGGCAAAACGGGTGCAAGAGAGAAATTTGCATCTGGGGCTTCATGTTCATCACCAGATGCTATGGATAAGGGTTACATATTTTTGGGAGAGGGTGAGGATGATCCTATAAATGTGGTTGACCTCGAAGGCGGTGATGAGGCTGAAGTGGGGTTTGGGTTTTGCGAAACGAAGGGTTTTCAGGTTAAGGAGGAAGAGAGGGGTGAGGAGGGTGAAGGATGTTATGTAGCAGCTGATAAAATTGAAACCTTTGGTGGTGATGAATATGGTGCTGTAGCTGAAAAGCCGGTTGTTTTGTTGCCTGATTCAGATAGTAGTTTTGACAGTGGATATGATTCATTTTGGTCTTCAACGGAGAGTGAGGATTTTGAGACGAGTGATGATGATTTTATGGTTGAAGAGGATGATGATGGAGTTGAGAGTGAATATTCGAGCAGTTCGGAGAGTGATGATTCTTCTGAAGATGATAAGAGTGGGGGATACAAGATGGTTAAGGAGAGGGTAAGAAAGGAGGTGAGTGAATCTAAGAGCAGTAGAGTTTGGAGAATGAAAGGTAAAAGGAAGAGTAGGCATGTAGCGGAGGAGAAATGGAATGGTGCTGATTGTGCTAGCGTGGCATCTAGTAAATCAAAGATTTATGAGGAGCAGGGAAAAAAGGCAGGAGAGAAACAAGAAGCAAACAGAGTAGAGAATGTCAATAATGCTGATCCTGAAGTCTTTAGTGTTCAGTGGCAAACTTCAGGTCTCTCTGTGCCTTCTGAAGATGAGACACTAGAGGATAAGGAGAAAGAAGGTAAGGGTCTTCAAAGGGTGTTCATTAAAAAAGAGACAGGATATTCATCTGTGATCAAGATGAGTGAGAAGAATAATAAGGTCAAGGCCAATGTTAAAGAAACTGGACATAAAGATGAGCTCCATGAAATCCTGAGGATGTCACCGACAACAAAGAACCAATGTTTTGAATTCTTCACTGAATGCTTTAGGAGGGGCAAGCGTGATTCTGCTAAAGATGTTTCACTAGATTTTGGAGAAAAGGTTGATGTTGATCAGGGTCAGACTCGGCCATTAGGTCCTAAGGAGACAATCCCTTTAAACTGCAACTCTATGATGAAAGATAAACCTATTGAAAAATCAGAGTCCGAGAAAGAGTTGGATATGTTGTGGGAAGAAATGGAAATGTTGCTTCAAGCTGAAAAAATTGGTTTCCAGGTTGATAATACAAAGACAAATGAAGGAAGAGAAAACGAAAAAAATCCAGCCTCGCAGTGCAAACATGACACTATTTTTGATGAGCAGATTGGTATATACTGCAGATGGTGTGGTTGGATTGAAACTGAAATTAAATATATCACACCAGAATTTATAGATTCTGAGAGATGTGGAAGAAGGATGTTGTCTGATGGAGGGAGGACCATGGGATTTGATGGGGTTCTGTTCACAGAAACTGGTAAAGACTCAGAAGCAGTCAGGTCTCAGAATCTTGGCACAGTTTGGGACCTTACTCCAGGCATAAAAGAAAGCTTGTTTCCTCACCAACAAGAGGGGTTTGAGTTTATTTGGGCAAATTTGGCAGGAACCACTGAGCTTTCCAAGTTGAAGAGGGTTGATGCTGAGAGTGAGGGTGGGTGCATAGTTTCTCATGCTCCTGGAACTGGAAAGACGAGGTTGACCATGGTGTTTTTGCAGACATATTTGCAAGTGTTTCCCAAGTGTTTGCCCGTTATCATTGCTCCTGCCAACATATTACTCACTTGGGAAGATGAGCTGAAGAAGTGGAACATAGGAATTCCATTCCACAATTTGAACAATGCTGAATTATCAGGGAAAGAACATGCCATCAGGGAAGTTGATTGGTCATTCAACCAACAGCAGAATAAGGATGTGATAAGAATGCTGAAGTTGTGTTCTTGGTACAAAGAGAAGAGCATTCTGTTAATCAGCTACAATCTATATGAGAAGCTAACCGGGGGAAAGTCTGAAAGAGACGCGGAGAAAGAAAAGAAAAATAGAAAGATTGGAAAAGAGAAGAAACGTGCAAGATCTAGGGAGTATGTTGAAACTGAATTGGGAAATGTTCTGCGAGACTATCCTGGTTTATTAGTTCTTGATGAAGGCCACACACCAAGGAACAAGCGTAGCTGTATTTGGAAGGTTCTCTCAGAGAGTAGAAGTCAGAAGCGGATCCTTCTTTCAGGGACTCCTTTCCAGAACAATTTTCGTGAACTATACAATATTTTATGCTTAATGAAACCATCTTTTCCTGAAAGCATACCGCAAGAACTCAAAAAGTTTTTGAAAAATAAACTCATACAGGAAACTGTGAGTTGGGAACCAATTTCTGTAGAAAATCCAGCCAGAGAAAAAATAAACCAGCTAAAGCTGCTGATGAATCCCTTTGTTCATGTTCACAAAGGTAGCATTCTTGAGAAGCACCTTCCTGGTTTAAAAGATTGTGTGCTGATTTTGAAGCCAGAATGCTTGCAGCAAACAATTCTGGAGAGCATTGATTGTTCTCAAAATGCACTTAATTTTGAGCACAAGTTGGCCTTGGTCTCTGTCCATCCCTCCCTTTTTCTCAGCTGCACTCTGTCAAAGAAAGAAAAATCTGTTGTTGACTCAGAGCAGTTGAAAAGGATTAGATCGGACCCTTATGAAGGGGTCAAAACCAAATTTCTGATTGAGTTTGTTAGACTGTGTGATGCAGTTAATGAGAAAGTCCTTGTGTTCAGCCAGTTCATTGATACCTTGTGCTTAATAAAGGACCAGCTGGAGTCAGCCTTCGATTGGAGTATGGGAACTGAAGTGTTGTATATGCATGGGAAGCTTGATCAAAAGCAAAAGCAAATTCTGATTCATAGTTTCAATGATGCAAATAGCCAGGCAAAGGTGTTGCTTGCTTCTACAAAAGCATGTTGTGAAGGCATTAACTTGGTTGGAGCTTCAAGGGTGGTGCTTGTTGATGTTGTTTGGAATCCCTCGGTGGAAAGGCAAGCTATTTGCCGAGCGTATAGACTTGGACAGAAGAGGGTTGTTTATACTTATCATCTTCTTGCACAGGGCACCCCTGAATGTGCAAAGTATTGTAGACAGTCAGAGAAGGACCGGTTATCTGAACTGGTATTCTCAAGTAGAAATGTTGAAAATGATGATGACGAGCTTAAGAGTGTTGGAGTAGAGTTTGTAGATAAAGTTCTTGATATCATGGTTCAGCACAAAAATCTCAAGGACATATTTGGTGAATCTCTGCTTCAACCAACGGACAGAGATTTGGAAACTTTGGGCCCCTAA 3429 0.4147 MYQGVPVACRTRSNKRVVVGNGLIMCRKRRRKVDEQDDEVIYLGENLEGKTGAREKFASGASCSSPDAMDKGYIFLGEGEDDPINVVDLEGGDEAEVGFGFCETKGFQVKEEERGEEGEGCYVAADKIETFGGDEYGAVAEKPVVLLPDSDSSFDSGYDSFWSSTESEDFETSDDDFMVEEDDDGVESEYSSSSESDDSSEDDKSGGYKMVKERVRKEVSESKSSRVWRMKGKRKSRHVAEEKWNGADCASVASSKSKIYEEQGKKAGEKQEANRVENVNNADPEVFSVQWQTSGLSVPSEDETLEDKEKEGKGLQRVFIKKETGYSSVIKMSEKNNKVKANVKETGHKDELHEILRMSPTTKNQCFEFFTECFRRGKRDSAKDVSLDFGEKVDVDQGQTRPLGPKETIPLNCNSMMKDKPIEKSESEKELDMLWEEMEMLLQAEKIGFQVDNTKTNEGRENEKNPASQCKHDTIFDEQIGIYCRWCGWIETEIKYITPEFIDSERCGRRMLSDGGRTMGFDGVLFTETGKDSEAVRSQNLGTVWDLTPGIKESLFPHQQEGFEFIWANLAGTTELSKLKRVDAESEGGCIVSHAPGTGKTRLTMVFLQTYLQVFPKCLPVIIAPANILLTWEDELKKWNIGIPFHNLNNAELSGKEHAIREVDWSFNQQQNKDVIRMLKLCSWYKEKSILLISYNLYEKLTGGKSERDAEKEKKNRKIGKEKKRARSREYVETELGNVLRDYPGLLVLDEGHTPRNKRSCIWKVLSESRSQKRILLSGTPFQNNFRELYNILCLMKPSFPESIPQELKKFLKNKLIQETVSWEPISVENPAREKINQLKLLMNPFVHVHKGSILEKHLPGLKDCVLILKPECLQQTILESIDCSQNALNFEHKLALVSVHPSLFLSCTLSKKEKSVVDSEQLKRIRSDPYEGVKTKFLIEFVRLCDAVNEKVLVFSQFIDTLCLIKDQLESAFDWSMGTEVLYMHGKLDQKQKQILIHSFNDANSQAKVLLASTKACCEGINLVGASRVVLVDVVWNPSVERQAICRAYRLGQKRVVYTYHLLAQGTPECAKYCRQSEKDRLSELVFSSRNVENDDDELKSVGVEFVDKVLDIMVQHKNLKDIFGESLLQPTDRDLETLGP* 1143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1443 1142 MobiDBLite consensus disorder prediction 168 196 - -
Pvu8g1443 1142 MobiDBLite consensus disorder prediction 164 234 - -
Pvu8g1443 1142 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 581 799 IPR014001 -
Pvu8g1443 1142 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 3 1138 - -
Pvu8g1443 1142 CDD SF2_C_SNF 935 1064 - -
Pvu8g1443 1142 SMART ultradead3 551 807 IPR014001 -
Pvu8g1443 1142 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 941 1101 IPR001650 -
Pvu8g1443 1142 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 545 847 IPR027417 -
Pvu8g1443 1142 MobiDBLite consensus disorder prediction 197 227 - -
Pvu8g1443 1142 Pfam SNF2-related domain 569 878 IPR000330 GO:0005524|GO:0140658
Pvu8g1443 1142 Gene3D - 864 1130 IPR027417 -
Pvu8g1443 1142 Gene3D - 527 847 IPR038718 -
Pvu8g1443 1142 Pfam Helicase conserved C-terminal domain 945 1053 IPR001650 -
Pvu8g1443 1142 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 744 1099 IPR027417 -
Pvu8g1443 1142 SMART helicmild6 968 1053 IPR001650 -
Pvu8g1443 1142 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 3 1138 IPR044567 GO:0080188
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1443 Pvu-Chr8 23284527 23289124 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1443 951 1083 RAD5 or RAD16-like Gene Family AT5G43530 39.850 1.02e-16 84.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Pvu8g1443 SNF2_N 1.3e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1443 K10875 - gmx:100812737 1275.38