Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1428 ATGGTTAGGAATCAGAAAAGTGTAGTAGGTATGGTTAGCCAGGAGAGAAAGAAGAAGATCAAAAACGGGTCTCAGGGGTTTGGGTCAATTTTCATGCATGCCGATCGCAAAGATTTGTTTTTTATGATTTTAGGTACCATTGGGGCTGTTGGAGAAGGCGTCACCACCCCTCTCGTGTTGTATATCAGTAGCCGGATGATCAATAGCATTGGGAGTTCATCCAACACGGATGGAAGCACCTTCATCCATAACATCAACAAGAATGCATTGGCGTGGTTATATTTAGCTGGTGTCTCTTTTGCCGTTTGCTTCGTCGAGGGTTACTGTTGGACAAGAACAAGCGAAAGACAAGCAGCGAGAATGAGATACAGGTATCTGAAAGCAGTGCTTAGACAAGATGTGGCGTACTTCGATTTGCATGTCACAAGCACGTCAGAGATCATCACCAGCGTCTCCAACGACAGCCTCGTAGTCCAAGATGTTCTTAGTGAAAAGGTTCCGAATTTCTTGATGAACATTTCATTGTTCGTTGGGAGCTACATAGCGGCGTTTGCAATGTTGTGGAGGCTGGCCATTGTGGGGTTTCCTTTCGTGGTTCTTCTGGTGATCCCGGGTATAATCTACGGCAAGACTTTGTTGGGGTTGTCTAGTAGAATCAGAGATGAGTATAATGAAGCAGGAACAGTGGTGGAACAAGCAATTTCATCCATCAGAACCGTTTATTCCTTCGTTGGGGAAAGCAAGACCATGAACGCTTTCTCAAACGCGCTTCAAGGGACGGTGAAGTTGGGCCTGAAGCAAGGCTGGGCCAAAGGCTTAGCCATTGGTAGCAACAGCGTCGTTTTCGGCATTTGGTCTTTCATGTGCTATTACGGCAGCAGACTCGTCATTTATCATGGCGTCAAAGGAGGAACAGTTTTCGCAGTTGGAGCAGCAATCGCTGTTGGTGGATTGGGTCTGGGAGCGGGTTTAACGAACGTGAAGTACTTTTCGGAAGCGGGTGCGGCAGCGGAGCGTATAAAGGAGGTGGTAAAGAGGGTTCCTTGGATTGATTCTGAGAGCGAGGAAGGGGAGATTCTGGAGAGAGTTTACGGGGAAGTGGAATTTGAGGGTGTGGAGTTTGCGTACCCGTCGAGACCAGAAAGTGCAATATTGAATGGGTTGAGTGTGAGGTTTCCTGCAGGGAAGAGAGTGGCGTTGGTTGGGGAGAGTGGGTCTGGGAAGTCAACGGTGATAGCGCTATTGCAGAGGTTCTATGACCCGGTGGTAGGAGAGGTGCGTTTGGATGGGGTTGGGATTCAGAAGCTGCAGGTCAAGTGGCTGAGATCGCAGATGGGGTTGGTGAGCCAGGAGCCTGCTCTGTTTGCGACAACCATTAAAGAGAACATACTTTTCGGCAAAGAGGACGCCACGGAGGACCAAGTTGTTCAGGCTGCAAAAGCTGCCCATGCCCATGATTTCATCTCCCTTCTGCCTCACGGTTACCAAACACAGGTGGGAGAGAGGGGGGTTCAGATGTCAGGGGGACAGAAACAGAGGATAGCAATTGCGAGGGCAATAATCAAGAAACCGCGAATTCTCCTTCTGGACGAAGCAACAAGCGCGCTAGACAATGAATCGGAGCGACTCGTCCAACAGGCATTGGACGACGTCGCCGAGGGTTGCACCGCTATCATCATCGCCCACCGTTTATCGACCATCCAAAACGTAGACCTCATCGCCGTCTTCGGGGGCGGAAAGGTCATAGAGATGGGCTCGCACGACGAGCTCCTCCAAAACGACACCAGCGCCTACGCCTCCGCGTTCCGCCTCCAGCAACAAACGGAGAAAGCGAAAGAAGACGAAAGCGCGGAAACCGTTGCTCCCGGAAGTGTTCCCTGCTCGATAACAACCACCGACACAGAAAACGACCACCTAGTGGGGCCATTTGGTGGGAGTTGTAGTGACGTGGCGGAAGCAAAGAAGGTACGCGCGCCGTCGTTTCGTAGACTTGTATCACTGAGCGTCCCCGAGTGGAAGCACGTGGTTTTGGGGTGCTTAAACGCGATGGTGTTCGGTGCCGTTCAGCCAGTTTACGCATTCACGATGGGGTCCACGATACTGTTGTATTTTCAGGCGGATCATGAGGAGATGGTGAGGAAGACTAGGATCTACTCGTTGGCCTTTCTGGGCCTCTTTGTGGTGTCTTTCATTGCGAATATTGGGCAGCATTATTGTTTCGCGTACATGGGGGAATACTTGACCAAACGGGTCAGAGAGACCGTGCTTTCCAAAATCCTCACTTTCGAAGTTGGATGGTTTGATTTGGACGAAAACTCCAGTGGCGCCATCTGTTCAAGGCTTGCCAAAGACGCCAATGTGGTGAGGTCTCTAGTGGGAGATAGAATGGCATTGCTGGTACAGACATTTTCCGCGGTGCTAACAGCCTACACACTAGGTCTGATAATTTCCTGGAGGCTTTCTATTGTTATGATAGCGGTACAACCTATCATCATTGCTTGCTTTTACACAAGGCGTGTTCTTCTCAAGAGCATGTCCAACAAGTCCATGAAGGCCCAGCAACAAAGTAGCAAACTAGCATCAGAAGCGGTTTCCAATCTCCGAACCGTCACTGCCTTTTCTTCTCAGGACCGGATTCTGAAAATGCTTGAAGCAGCCCAAGTGGGCCCAAGCAGAGAGAACATTCGGCAGTCATGGTTTGCTGGCATTGGGCTTGGATTCTCCCAAGGCCTTGCATCTTGCGTTTGGGCCCTAAACTATTGGTACGGTGGGAAGCTCATCTCGCACGGGTACTTAACAACAAAAACCTTCTTTGAGAGCTTCATGGTTTTGGTGAGCACTGGGAGGATAATTGCGGATGCGGGAAGCATGACCACGGATATTGCTAGAGGTGCAGATGTTGTGGCCTCTACTTTTGGCATCATAGATAGGTGTACAAAAATAGAGCCTGATGACCCAAATGGGTACAAGGCAGAGAAGTTGGTTGGTGAAATAGAGTTTCATGAGGTGCATTTTACGTACCCTACCAGGCCTGATATGGCTATCTTCCAAGGGTTCTCTATGAAAATGGAGGCAGGGAAATCAACGGCATTGGTGGGGCAAAGTGGATCTGGGAAATCAACGATCATAGGGCTAATAGAGAGATTTTACGATCCACTTAGGGGGATGGTGACAATAGATGGGATGAACATAAGATCGTATAACCTAAAGTCACTAAGGAAGCATATAGCACTTGTGAGCCAGGAGCCAACGTTGTTTGGTGGGACCATAAGAGAGAACATTACATATGGAAGAGGTGGGAGGGTTGATGAGAGTGAGATGATAGAGGCAGCACGAGCAGCTAACGCTCATGATTTCATAGCGGGTCTGAAGGAGGGTTACGAGACATGGTGTGGGGAAAAAGGGGTACAACTTTCAGGGGGTCAAAAGCAAAGGATAGCAATAGCGAGGGCCATACTGAAAAACCCTAAGGTGTTGCTGTTGGACGAGGCCACAAGTGCATTGGATGGTCAATCAGAGAAGGTGGTGCAAGATACCTTGACGAGGGTAATGATAGGGAGGACCAGCGTGGTGGTGGCACACAGGTTGAGCACCATTCACAATTGTGATGCTATTGCTGTGATGGAAAAGGGGAGGGTGGTGGAGACTGGAACCCACTCCTCCTTGTTGGCCAAAGGACCATGTGGAGCTTATTACTCTTTGGTGAGTCTTCAGACTAGACATGCAGCCACACCCAACTACACTTCTACTAAAGCTACCCACTCTGTCAGTTGA 3774 0.4958 MVRNQKSVVGMVSQERKKKIKNGSQGFGSIFMHADRKDLFFMILGTIGAVGEGVTTPLVLYISSRMINSIGSSSNTDGSTFIHNINKNALAWLYLAGVSFAVCFVEGYCWTRTSERQAARMRYRYLKAVLRQDVAYFDLHVTSTSEIITSVSNDSLVVQDVLSEKVPNFLMNISLFVGSYIAAFAMLWRLAIVGFPFVVLLVIPGIIYGKTLLGLSSRIRDEYNEAGTVVEQAISSIRTVYSFVGESKTMNAFSNALQGTVKLGLKQGWAKGLAIGSNSVVFGIWSFMCYYGSRLVIYHGVKGGTVFAVGAAIAVGGLGLGAGLTNVKYFSEAGAAAERIKEVVKRVPWIDSESEEGEILERVYGEVEFEGVEFAYPSRPESAILNGLSVRFPAGKRVALVGESGSGKSTVIALLQRFYDPVVGEVRLDGVGIQKLQVKWLRSQMGLVSQEPALFATTIKENILFGKEDATEDQVVQAAKAAHAHDFISLLPHGYQTQVGERGVQMSGGQKQRIAIARAIIKKPRILLLDEATSALDNESERLVQQALDDVAEGCTAIIIAHRLSTIQNVDLIAVFGGGKVIEMGSHDELLQNDTSAYASAFRLQQQTEKAKEDESAETVAPGSVPCSITTTDTENDHLVGPFGGSCSDVAEAKKVRAPSFRRLVSLSVPEWKHVVLGCLNAMVFGAVQPVYAFTMGSTILLYFQADHEEMVRKTRIYSLAFLGLFVVSFIANIGQHYCFAYMGEYLTKRVRETVLSKILTFEVGWFDLDENSSGAICSRLAKDANVVRSLVGDRMALLVQTFSAVLTAYTLGLIISWRLSIVMIAVQPIIIACFYTRRVLLKSMSNKSMKAQQQSSKLASEAVSNLRTVTAFSSQDRILKMLEAAQVGPSRENIRQSWFAGIGLGFSQGLASCVWALNYWYGGKLISHGYLTTKTFFESFMVLVSTGRIIADAGSMTTDIARGADVVASTFGIIDRCTKIEPDDPNGYKAEKLVGEIEFHEVHFTYPTRPDMAIFQGFSMKMEAGKSTALVGQSGSGKSTIIGLIERFYDPLRGMVTIDGMNIRSYNLKSLRKHIALVSQEPTLFGGTIRENITYGRGGRVDESEMIEAARAANAHDFIAGLKEGYETWCGEKGVQLSGGQKQRIAIARAILKNPKVLLLDEATSALDGQSEKVVQDTLTRVMIGRTSVVVAHRLSTIHNCDAIAVMEKGRVVETGTHSSLLAKGPCGAYYSLVSLQTRHAATPNYTSTKATHSVS* 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1428 1257 CDD ABC_6TM_Pgp_ABCB1_D2_like 666 981 - -
Pvu8g1428 1257 SUPERFAMILY ABC transporter transmembrane region 32 351 IPR036640 GO:0005524|GO:0016021
Pvu8g1428 1257 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 43 332 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu8g1428 1257 Gene3D - 357 606 IPR027417 -
Pvu8g1428 1257 SUPERFAMILY ABC transporter transmembrane region 659 982 IPR036640 GO:0005524|GO:0016021
Pvu8g1428 1257 Pfam ABC transporter transmembrane region 42 310 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu8g1428 1257 Pfam ABC transporter transmembrane region 676 946 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu8g1428 1257 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 26 1245 - -
Pvu8g1428 1257 Pfam ABC transporter 1017 1166 IPR003439 GO:0005524
Pvu8g1428 1257 Pfam ABC transporter 385 534 IPR003439 GO:0005524
Pvu8g1428 1257 ProSitePatterns ABC transporters family signature. 506 520 IPR017871 GO:0005524
Pvu8g1428 1257 Gene3D ABC transporter type 1, transmembrane domain 30 964 IPR036640 GO:0005524|GO:0016021
Pvu8g1428 1257 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 367 603 IPR003439 GO:0005524
Pvu8g1428 1257 Gene3D - 988 1247 IPR027417 -
Pvu8g1428 1257 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 998 1235 IPR003439 GO:0005524
Pvu8g1428 1257 CDD ABC_MTABC3_MDL1_MDL2 998 1238 - -
Pvu8g1428 1257 SMART AAA_5 394 588 IPR003593 -
Pvu8g1428 1257 SMART AAA_5 1025 1198 IPR003593 -
Pvu8g1428 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 359 605 IPR027417 -
Pvu8g1428 1257 CDD ABC_MTABC3_MDL1_MDL2 367 605 - -
Pvu8g1428 1257 CDD ABC_6TM_Pgp_ABCB1_D1_like 42 340 - -
Pvu8g1428 1257 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 682 963 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Pvu8g1428 1257 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 26 1245 IPR039421 -
Pvu8g1428 1257 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 988 1238 IPR027417 -
Pvu8g1428 1257 ProSitePatterns ABC transporters family signature. 1138 1152 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1428 Pvu-Chr8 22685017 22693038 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1428 15 1238 Calmodulin-binding Proteins AT2G36910 43.200 0.0 1004
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1428 K05658 - gmx:100809399 2018.05