Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1389 ATGCCTCCAAATGTAGAGTATTTGTCGTCTGTGGCAAAACAAGCGGAGCAGCTTCGAGTGGACGGCAACAACTACTTCAAGAAAGAGCGTTTTGGAGCTTCCATCGACGCTTACACTGAGGCAATTGCACTATGCCCCGATGTTCCGGTGTATTGGACCAACCGCGCTCTCTGCCATCTCAAGCGCAATGATTGGACCAGAGTTGAGGAAGACTCTCGTCAAGCTATGAAGCTTGACAACAATTTGGTTAAGGCCCACTATATGTTAGGTCTTTCATTGGTACAGAGACAGGAGTTTGCTGAAGGAATCTTAGAATTGAAAAAGGCTTTGGATCTTGATAGAGGTTCCCATCCTAAGGGCCATATGGTAGAGGAAATATGGCAGGAGCTTGCAAAAGCAAAATACCTAGAGTGGGAACATTCATATACTAAGCGATCATGGGAACTACAGTGCTTGAAAGAAGCTTGTGAGTATGCTCTAAAGGAAAAACATTTTCTCGAAGTCCCCCACATAGAAGGATTTGTAGAAGATGATACTGCCCATTTAGAACAATTAGAGGCTTTAGGAAGAGTGTTTGATAAAGTTGCAGAAAATGACATGCCTACCGAGGTGCCAGATTATCTGTGCTGTAGAATCACACTTGATATTTTTTGTGATCCTGTCATTACCCCAAGTGGCCTTACATACGAGAAGACAGTAATCATTGATCATCTTGAGAAGGAGAAAAGGATGAGCGAGCGGAGTGTGTATTTGCTTCAGGGTGTTGGAGCGAATGGGGAGCAGGGTGGAACGTTTTTTTTTTACTCTTCACAAAAGTGA 819 0.4371 MPPNVEYLSSVAKQAEQLRVDGNNYFKKERFGASIDAYTEAIALCPDVPVYWTNRALCHLKRNDWTRVEEDSRQAMKLDNNLVKAHYMLGLSLVQRQEFAEGILELKKALDLDRGSHPKGHMVEEIWQELAKAKYLEWEHSYTKRSWELQCLKEACEYALKEKHFLEVPHIEGFVEDDTAHLEQLEALGRVFDKVAENDMPTEVPDYLCCRITLDIFCDPVITPSGLTYEKTVIIDHLEKEKRMSERSVYLLQGVGANGEQGGTFFFYSSQK* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1389 272 ProSiteProfiles U-box domain profile. 203 234 IPR003613 GO:0004842|GO:0016567
Pvu8g1389 272 PANTHER CARBOXYL TERMINUS OF HSC70-INTERACTING PROTEIN-RELATED 7 243 - -
Pvu8g1389 272 SUPERFAMILY RING/U-box 197 240 - -
Pvu8g1389 272 SMART Ubox_2 207 259 IPR003613 GO:0004842|GO:0016567
Pvu8g1389 272 Gene3D Tetratricopeptide repeat domain 9 145 IPR011990 GO:0005515
Pvu8g1389 272 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 7 243 IPR045200 GO:0000209|GO:0061630
Pvu8g1389 272 SUPERFAMILY TPR-like 12 134 IPR011990 GO:0005515
Pvu8g1389 272 Pfam U-box domain 204 243 IPR003613 GO:0004842|GO:0016567
Pvu8g1389 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 250 IPR013083 -
Pvu8g1389 272 SMART tpr_5 49 82 IPR019734 GO:0005515
Pvu8g1389 272 SMART tpr_5 15 48 IPR019734 GO:0005515
Pvu8g1389 272 SMART tpr_5 83 116 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1389 Pvu-Chr8 21315093 21321109 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1389 15 240 U-box Gene Family AT3G07370 64.317 1.48e-106 308
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1389 K09561 - gmx:100796519 370.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1389 8 21315093 21321109 Pvu10g0314 10 4383724 4394180 PCT