Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1388 ATGGCCAAGCCAGGGGTGTTGGAATCTGATCCAGGGGTGATGGTGAAGAAGGCCATAGAGTTGAAGAGGGAGCTGCAGAGGTTGGTGAAGTCCATTGTGGATGATGAGGATTGCAGCACCGAGACCATTGATCAGGCAAAAGAGACTCTTTGTGTTCTCAAGGAGTTGAAACTCAGAAAGAGGTCTTCTCTGTGTCTGAAGCTCCACAACAGGAATGTGTCATCTTGCCCTGATGAATTCAAGTGTCCTCTTTCCAAGGAATTGATGAGAGATCCTGTCATTGTGGCTTCTGGTCAGACATATGATAGATCTTTCATTCAAAAATGGCTAAATGCTGGAAACAGGACTTGCCCTCGAACGCATCAAGTCCTTTCACACACTGTTCTTACACCAAACCATCTAATAAGGGAAATGGTAGAACAATGGTTAAAAAACCAAGGGGTTGAATTGTCAAATACTGTTGAATACATTGATGAGGAAGGTTTAAACCAAGCAGACCGCGAGCATTTTCTTTGTTTGCTTAAGAAAATGTCATCAACACTTTCTGATCAGAAGACAGCTGCAAAAGAACTGCGCATGTTGACAAAGAAGCATCCTTGTTTCCGGGTACTTTTCTGCGATTCTGCAGATGCCATTCCCCAATTGCTCAAGCCAATTTGTGGGAGTGATTCTTTCAGCAGCATTCACCCTGATCTCCAAGAAGACGTAATCACAACACTCCTCAATATCTCTATTCATGATAACAACAAAAAGCTAGTGGCCGAAACTCCTATGGTAATTCCTCTCCTTATGAGAGCATTGAGATCTGGAACAATTGAAACAAGAAGCAATGCTGCAGCTGCCCTTTTCACTTTGTCAGCCATTGACTCAAACAAAGAAATCATAGGGAAATCAGGTGCCTTAAAGCCATTGATCGATCTCTTGGAAGAAGGGCATCCCTTAGCCATGAAGGATGTTGCTTCAGCAATTTTTAACATATGTGTAATGCATGAGAACAAGGCAAGAGCCGTGAAGGACGGTGCAGTGAGAGTGATTTTGACAAAGATAAAGAATCAGGTTCATGTTGATGAATTACTAGCCATCCTTGCACTGCTTTCAAGTCACCAGAGGGCTGTTCATGACATGGGAGATCTTGGAGCTGTGCCTAGCTTGCTAAGAATCATAAGGGAGAGTTCATGTGAACGTAACAAGGAGAATTGTGTAGCAATCCTTCAAACAATTTGTTTGTATGATAGATCAAAGTTGAAGGAAATAAGGGAAGAGGAGAACAGCCACAAAACAATCTCTGAGCTAGCACAGAGTGGAACATCAAGGGCTAAGAGGAAAGCAAGTGGAATTCTTGAGAGACTGAACAGGGTTGTTAATATCACACACACTGCATAA 1383 0.4273 MAKPGVLESDPGVMVKKAIELKRELQRLVKSIVDDEDCSTETIDQAKETLCVLKELKLRKRSSLCLKLHNRNVSSCPDEFKCPLSKELMRDPVIVASGQTYDRSFIQKWLNAGNRTCPRTHQVLSHTVLTPNHLIREMVEQWLKNQGVELSNTVEYIDEEGLNQADREHFLCLLKKMSSTLSDQKTAAKELRMLTKKHPCFRVLFCDSADAIPQLLKPICGSDSFSSIHPDLQEDVITTLLNISIHDNNKKLVAETPMVIPLLMRALRSGTIETRSNAAAALFTLSAIDSNKEIIGKSGALKPLIDLLEEGHPLAMKDVASAIFNICVMHENKARAVKDGAVRVILTKIKNQVHVDELLAILALLSSHQRAVHDMGDLGAVPSLLRIIRESSCERNKENCVAILQTICLYDRSKLKEIREEENSHKTISELAQSGTSRAKRKASGILERLNRVVNITHTA* 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1388 460 Gene3D - 357 455 IPR011989 -
Pvu8g1388 460 PANTHER U BOX DOMAIN-CONTAINING 5 458 - -
Pvu8g1388 460 SUPERFAMILY ARM repeat 130 450 IPR016024 -
Pvu8g1388 460 Pfam U-box domain 77 146 IPR003613 GO:0004842|GO:0016567
Pvu8g1388 460 SMART arm_5 367 409 IPR000225 GO:0005515
Pvu8g1388 460 SMART arm_5 246 287 IPR000225 GO:0005515
Pvu8g1388 460 SMART arm_5 288 328 IPR000225 GO:0005515
Pvu8g1388 460 SMART arm_5 196 245 IPR000225 GO:0005515
Pvu8g1388 460 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 458 - -
Pvu8g1388 460 SMART Ubox_2 79 142 IPR003613 GO:0004842|GO:0016567
Pvu8g1388 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 63 156 IPR013083 -
Pvu8g1388 460 CDD RING-Ubox_PUB 80 122 IPR045210 -
Pvu8g1388 460 Gene3D - 163 356 IPR011989 -
Pvu8g1388 460 ProSiteProfiles U-box domain profile. 75 149 IPR003613 GO:0004842|GO:0016567
Pvu8g1388 460 SUPERFAMILY RING/U-box 71 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1388 Pvu-Chr8 21300236 21303673 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1388 138 460 U-box Gene Family AT3G07360 59.819 2.67e-130 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1388 - - gmx:100809408 837.795