Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1380 ATGGAAAACCATTTCTTCCTCAATGCTGCTGTTCCCCCTCAGCTGCATTTTCACCCTTCACCACCTCCTTGTCCACCCTCCTGGCACTCACTCTCTTCTCCCATGGATGTTCAACTTTTGAATTCTTCAACCGACCGGACGCAGGATTGCTTTTATACACCATCATGGGACAAGTCAACGGATCATGCTGTTCAGTTTGATTCTGCCCTCAGTTCCATGGTGTCTTCTCCTGCAGCTTCCAATTCCAACATGTCAAGTGACAATTTTGTCATCAGGGAGTTGATTGGGAAACTGGGAAACATTGGTGGTGGTGGTGGCTCTGATGAGATCTCGCCTCATTCTCAGCCTTTGCTTGGTGCGTCTTCCTACATCAATGGCAATAACAGCACCAACACTTCATGTTACAGCACCCCTTTGAGTTCTCCTCCAAAGGTGAACATGAACAAGATCCCCTCAATGATGAATCACATGGTAAAAGAGGGCGTGCCCCCCAGTTTGGGGACGTCAATGTCCTTGAATTCCACTGTGGCAGAATTCTCAGCTGATCCCGGCTTTGCTGAGAGGGCTGCAAAATTTTCTTGCTTTGGAAGTAGGAGTTTCAATGGCAGGACCACCCAATTGGGCCCCAACAATCCTGAGTTGACTCACAGATCTTCTCCATTGGTGGAAAATGGGAAGCTCCCTAGAGTCTCAAGTAGTCCATCTCTCAAAGTGCTTGGATCTCAAATGAGTGCCCAGGAGAACAATAATTCTCCATTGCAAGACCAAATGGAAGTGGCCAATTCTCAAGAGGAATCAACAATCTCAGAACAAATTCCAAATGGGGACAATGGGGTGAAACCTTCCCCTTATGCGAATTCTAGAAAAAGAAAAGGTCCATCCAAAGGAAAAGCCAAGGAAACTTCAACCCCCACCAACCCCCCTACGGCTGCTGAAGCTAGTGAAGATTCAAATGCAAAGCGCAGCAAGGCTGAGGAGGGTGAAGGGAATGAAAATGGGCAAGTGAAGGCAGAGGAAGAGTCCAAAGGGGTAACTAGCAATGCAAATGATGACAAACAGAACAGGAGTAACTCAAAACCTCCAGAGGCACCAAAGGATTACATTCATGTCAGAGCAAGAAGAGGTCAAGCCACTGACAGTCATAGTCTTGCAGAAAGAGTCCGGAGGGAGAAAATCAGCGAAAGAATGAAGCTTCTCCAAGATCTTGTCCCAGGTTGCAATAAGGTCACAGGTAAAGCACTTATGCTTGATGAAATTATAAACTATGTCCAGTCATTGCAGCGCCAAGTTGAGTTTCTGTCTATGAAGTTGGCTTCTGTTAACACCAGGCTGGATTTTAGTATTGAGAGTCTAATCTCGAAAGATATATTTCAATCAAATAATTCTTTGGCACACCCAATATTCCCACTAGATTCCTCAGCACCAGCCTTTTATGGGCAACACCCTCAGCAAAACCCAGCAATCCACAGTAACATTCCTAATGGAACTGTGTCCCACACCTCAGTGGACCCATTAGATACTGGTTTGTGCCAAAACCTTGGCATGCAGTTACCTCACCTAAATGCCTTTAATGAAGGTGCCTCTCAGTATCCAATAACATTCTCTGAAGATGACCTCCACACCATTGTTCAGATGGGATTTGGCCAAACTGCAAATAGGAAAACACCAATACAATCTCAGAGTTTCAATGGCTCAAATCAAGTACCCCTATGA 1713 0.4559 MENHFFLNAAVPPQLHFHPSPPPCPPSWHSLSSPMDVQLLNSSTDRTQDCFYTPSWDKSTDHAVQFDSALSSMVSSPAASNSNMSSDNFVIRELIGKLGNIGGGGGSDEISPHSQPLLGASSYINGNNSTNTSCYSTPLSSPPKVNMNKIPSMMNHMVKEGVPPSLGTSMSLNSTVAEFSADPGFAERAAKFSCFGSRSFNGRTTQLGPNNPELTHRSSPLVENGKLPRVSSSPSLKVLGSQMSAQENNNSPLQDQMEVANSQEESTISEQIPNGDNGVKPSPYANSRKRKGPSKGKAKETSTPTNPPTAAEASEDSNAKRSKAEEGEGNENGQVKAEEESKGVTSNANDDKQNRSNSKPPEAPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFSIESLISKDIFQSNNSLAHPIFPLDSSAPAFYGQHPQQNPAIHSNIPNGTVSHTSVDPLDTGLCQNLGMQLPHLNAFNEGASQYPITFSEDDLHTIVQMGFGQTANRKTPIQSQSFNGSNQVPL* 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1380 570 Coils Coil 423 443 - -
Pvu8g1380 570 MobiDBLite consensus disorder prediction 316 346 - -
Pvu8g1380 570 MobiDBLite consensus disorder prediction 197 218 - -
Pvu8g1380 570 PANTHER BHLH TRANSCRIPTION FACTOR 2 567 - -
Pvu8g1380 570 MobiDBLite consensus disorder prediction 355 384 - -
Pvu8g1380 570 Pfam Helix-loop-helix DNA-binding domain 380 427 IPR011598 GO:0046983
Pvu8g1380 570 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 376 426 IPR011598 GO:0046983
Pvu8g1380 570 Gene3D - 373 448 IPR036638 GO:0046983
Pvu8g1380 570 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 567 IPR024097 GO:0006355
Pvu8g1380 570 MobiDBLite consensus disorder prediction 197 384 - -
Pvu8g1380 570 SMART finulus 382 432 IPR011598 GO:0046983
Pvu8g1380 570 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 374 445 IPR036638 GO:0046983
Pvu8g1380 570 MobiDBLite consensus disorder prediction 298 315 - -
Pvu8g1380 570 MobiDBLite consensus disorder prediction 225 276 - -
Pvu8g1380 570 CDD bHLH_AtBPE_like 366 451 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1380 Pvu-Chr8 20993211 20996126 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1380 1 536 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 44.059 2.60e-112 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu8g1380 HLH 4.5e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1380 - - gmx:100787699 895.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1380 8 20993211 20996126 Pvu10g0259 10 3629864 3633299 PCT