Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1325 ATGGAAGGTCGCCGGAGGGTAACACTACATGAAGAAATGTCAGCTTCCGACAGCAGCCGAGCCCGAGTGCTAACCGGCTTGACCCTTGACGACGTGTTAGCGAACCAGAAGAGACCTTCCTGGACGCCGCCCAGGGAACCACCGTCCAAGAACCGAACCCTACTTGACATCATCAGAGAAGACGAGACCAACAAAAAGGATCGCAGATCTTGGAAAGCTTTCAAGGACAAGCTTCGGCTAAAGCGTGCAGGGTCTGCTTGGATATCGACAATTCATATTCCTACTTCGGATGTTCCTATCCCTAACCCGAATAGCAGAATCTTTACCCAGTTTGGTCGCCGAAACTCGGTCCGATTCCCCAGTCTGACTACAAGTCCGACTGATTCTCAGACTCAGACTCAGACTCAGACTCCGACTCCGACTCCGACTCCCTCCGACTCGGACATGTCATCTAACTACATGGCTCACCAGGTCGAGGACCTCAACCCTGCCACCGAAGAGTCCAGTTCTCCGGTCGCCGCAGCTCCGGCAATCCGCCCTCAGTTCAGCCGTCGCGGATCCACCCGCTTCGGCGGCGACTGCGGCGAGAATAACACAGCCGGAACCCTCCGGCCGCAGCTCTCGATTCGGAACACGCCCAACCTGCAGTCGGAGCCGTACAAGCGGGGGCGCGTGGTGACCTTCCGCGACAGCTTCGACGACGAGGATGCGGACGAGGAGGGCGAGAAGCCGGGGGAGGGGAGGGCGCTGTCAGCGAGGGAGGCGGTGGCGGCGCAGGAGGCGTCAGAAGCGGCGGCGCAGGAGGCGGAGGCGGAGGAGGAGCAGGCACCGGTGATGATGTCACTGATGGACTTGTTAGAGGAGACTGATAGGGAAATGGGGCTTGAAGGATCAAGGTATATATTGAGTGATGATGAGGATTTTGATGAAGATGCAGATGAAGAAGATGATGGAGATGGAGTGGGTTCCATGGAGCACACTTGCTGTGTTTGTATGGTGAGGCATAAGACTGCTGCTTTTATACCTTGTGGCCACACTTTCTGCAGGATGTGTTCAAGGGAGCTTATGGTTAGTAGGGGGAACTGCCCACTCTGCAACAATTTCATTTTGGAGATTCTTGAGATTTTTTAA 1131 0.5561 MEGRRRVTLHEEMSASDSSRARVLTGLTLDDVLANQKRPSWTPPREPPSKNRTLLDIIREDETNKKDRRSWKAFKDKLRLKRAGSAWISTIHIPTSDVPIPNPNSRIFTQFGRRNSVRFPSLTTSPTDSQTQTQTQTPTPTPTPSDSDMSSNYMAHQVEDLNPATEESSSPVAAAPAIRPQFSRRGSTRFGGDCGENNTAGTLRPQLSIRNTPNLQSEPYKRGRVVTFRDSFDDEDADEEGEKPGEGRALSAREAVAAQEASEAAAQEAEAEEEQAPVMMSLMDLLEETDREMGLEGSRYILSDDEDFDEDADEEDDGDGVGSMEHTCCVCMVRHKTAAFIPCGHTFCRMCSRELMVSRGNCPLCNNFILEILEIF* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1325 376 SMART ring_2 328 365 IPR001841 -
Pvu8g1325 376 PANTHER OS01G0917900 PROTEIN 2 376 - -
Pvu8g1325 376 MobiDBLite consensus disorder prediction 1 20 - -
Pvu8g1325 376 Coils Coil 252 275 - -
Pvu8g1325 376 CDD RING-HC 328 365 - -
Pvu8g1325 376 MobiDBLite consensus disorder prediction 112 276 - -
Pvu8g1325 376 PANTHER OS01G0917900 PROTEIN 2 376 - -
Pvu8g1325 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 376 IPR013083 -
Pvu8g1325 376 ProSiteProfiles Zinc finger RING-type profile. 328 366 IPR001841 -
Pvu8g1325 376 Pfam Zinc finger, C3HC4 type (RING finger) 325 369 - -
Pvu8g1325 376 SUPERFAMILY RING/U-box 327 372 - -
Pvu8g1325 376 MobiDBLite consensus disorder prediction 192 218 - -
Pvu8g1325 376 MobiDBLite consensus disorder prediction 112 169 - -
Pvu8g1325 376 MobiDBLite consensus disorder prediction 1 17 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1325 Pvu-Chr8 19163499 19166256 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1325 213 376 C3H Transcription Factor Family AT3G25030 42.012 1.03e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1325 - - var:108328735 549.28