Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1303 ATGACTTTTGACGACACAAACAGGTTATTAAGGAACAGAGTTTCTGCTCAACAAGCCCGTGAAAGGAAAAAGGTTTACGTAAATGAGTTGGAATCAAGTGCTGTGGAGTTGGAAGAGAAGAATAGCAATTTAGAAGAGCAAATTTCAACGTTGATCAATGAAAACACCATGCTGCGAAAGATTCTTATGAACACGAGGGCTAAAGTTGACGACAATTAG 219 0.3881 MTFDDTNRLLRNRVSAQQARERKKVYVNELESSAVELEEKNSNLEEQISTLINENTMLRKILMNTRAKVDDN* 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1303 72 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 8 65 IPR004827 GO:0003700|GO:0006355
Pvu8g1303 72 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 8 22 IPR004827 GO:0003700|GO:0006355
Pvu8g1303 72 SUPERFAMILY Leucine zipper domain 7 63 IPR046347 GO:0003700|GO:0006355
Pvu8g1303 72 PANTHER TRANSCRIPTIONAL ACTIVATOR HAC1 7 71 IPR044280 GO:0000981|GO:0045944
Pvu8g1303 72 CDD bZIP_HY5-like 8 55 - -
Pvu8g1303 72 SMART brlzneu 2 64 IPR004827 GO:0003700|GO:0006355
Pvu8g1303 72 Coils Coil 20 61 - -
Pvu8g1303 72 Gene3D Single helix bin 23 64 - -
Pvu8g1303 72 Pfam bZIP transcription factor 7 62 IPR004827 GO:0003700|GO:0006355
Pvu8g1303 72 PANTHER TRANSCRIPTION FACTOR HY5-LIKE 7 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1303 Pvu-Chr8 18407782 18408212 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1303 8 72 Basic region leucine zipper (bZIP) Transcription Factor Gene Family AT3G17609 76.923 8.39e-29 98.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Pvu8g1303 bZIP_1 1.5e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1303 K16241 - fve:101297428 110.153