Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1296 ATGGAGAACAACGCATTCAGAGATCGAAACTTTGCGGATGATGAACACGAAGAAATCCCCGAATCCTTCGTATGCTGCGTTTGTCTGGATCTATTATACAAGCCCATTGTGCTATCATGTGGCCACATATGCTGTTTCTGGTGTGTCTACAATTCAATGAATTGTCTGCGCGAGTCTCAATGTCCAGTATGTAGGCATCAATACTATCACTTCCCAACAGTCTGCCAATTGCTTCACTTTTTGCTTCTTAAGATTTATACTGTTGCTTACAAGAGAAGGGAAGACCAAACTCTTGAGGAAGAAAAGAAATCAGGATTCTACTCTCCTCAATTTGATCCTGATACATGTGAATCACAAGCTAAATTTGGTCATTCTGGTATCCCTTCTTCCTCCTCTGTTACGAATTTGACATCCAACTCATGTAATGTGGGAACTTCTGAATGTACGGAGCAATCAGGGTCCACCACCCATGAAAGAGACGAAGGAATAGTCTATTCCAATGGAGAGGCTGATATTGCTGGAACTCCTGCTCAAACTCAGGAAGAGATTTCTCTCCAACAGAAATTATCAGTTGCAGATGTGACGTGTACAATGTGCAAGCAAATGCTCTTTCGTCCTGTAGTTCTTAATTGTGGGCATGTATACTGTCAAACTTGTGTCGTCAACAACACAGATGACGACACGCTCAGATGCCGAGTTTGTCAAAGTCCACATCCCAGAAGGTTTCCAAAAGTATGTTTGGAGTTAGATCACTTTTTGGAGGAACAACTTCCTGAAGAATATAGACAGCGGAGAGATGCCATTGAACTAAAACAGATCAAAGTCAAACTTGAGACCACCCCTTCTTGTTCATTGGATAAGGGTAACAAAGGAGAAAATAAAGATTGGTGGTCAGATCCTGACTCAAAAGTTCACATTGGAGTTGGTTGTGATTTTTGCGGGATGTTTCCAATAATTGGAGATAGATATAGATGCGCTGATTGTACGGAAAAGATGGGTTTTGATCTTTGTGGTGATTGCTATGCAACTCGATCCAAGCTTCCCGGTCGATTTAATCAACAACACACCTCAGAGCACAAGTTCAAGCTTGAGCAATCCAACATTATGCATAACATAATGTTGAGGCTGGCCACAGCACAGTTAGGGGACACTTCTATTGATCTGGAGTCTGTAGGAAACTTAGAGATTGCCTCAGACGGCCCCACTTTGTTTGATGATGCAGTAGATAACCACAGTGATTCTGAAGCCACCAATTGA 1257 0.4208 MENNAFRDRNFADDEHEEIPESFVCCVCLDLLYKPIVLSCGHICCFWCVYNSMNCLRESQCPVCRHQYYHFPTVCQLLHFLLLKIYTVAYKRREDQTLEEEKKSGFYSPQFDPDTCESQAKFGHSGIPSSSSVTNLTSNSCNVGTSECTEQSGSTTHERDEGIVYSNGEADIAGTPAQTQEEISLQQKLSVADVTCTMCKQMLFRPVVLNCGHVYCQTCVVNNTDDDTLRCRVCQSPHPRRFPKVCLELDHFLEEQLPEEYRQRRDAIELKQIKVKLETTPSCSLDKGNKGENKDWWSDPDSKVHIGVGCDFCGMFPIIGDRYRCADCTEKMGFDLCGDCYATRSKLPGRFNQQHTSEHKFKLEQSNIMHNIMLRLATAQLGDTSIDLESVGNLEIASDGPTLFDDAVDNHSDSEATN* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1296 418 SMART ring_2 25 64 IPR001841 -
Pvu8g1296 418 SMART ring_2 196 234 IPR001841 -
Pvu8g1296 418 SUPERFAMILY RING/U-box 191 239 - -
Pvu8g1296 418 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRT1-LIKE 9 410 - -
Pvu8g1296 418 ProSiteProfiles Zinc finger RING-type profile. 25 65 IPR001841 -
Pvu8g1296 418 SMART zz_5 304 353 IPR000433 GO:0008270
Pvu8g1296 418 CDD RING-HC 25 64 - -
Pvu8g1296 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 109 IPR013083 -
Pvu8g1296 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 182 283 IPR013083 -
Pvu8g1296 418 ProSiteProfiles Zinc finger ZZ-type profile. 305 369 IPR000433 GO:0008270
Pvu8g1296 418 SUPERFAMILY RING/U-box 301 362 - -
Pvu8g1296 418 Gene3D - 298 364 IPR043145 -
Pvu8g1296 418 PANTHER UNCHARACTERIZED 9 410 - -
Pvu8g1296 418 ProSitePatterns Zinc finger RING-type signature. 211 220 IPR017907 -
Pvu8g1296 418 ProSiteProfiles Zinc finger RING-type profile. 196 235 IPR001841 -
Pvu8g1296 418 Pfam Zinc finger, ZZ type 306 345 IPR000433 GO:0008270
Pvu8g1296 418 Pfam RING-type zinc-finger 196 231 IPR027370 -
Pvu8g1296 418 SUPERFAMILY RING/U-box 12 71 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1296 23 102 C3H Transcription Factor Family AT2G42030 31.250 4.02e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1296 - - gmx:100782681 742.265