Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1295 ATGAAGCCTACTATGGCTCAGAATCAGAGTAATTGGGAAGCTGATAAAATGCTTGATGTTTATATTTATGATTATTTAATGAAAAGAAAATTACATGCCACTGCGAAAGCTTTTGTCGCAGAAGGAAAAGTTGCCACGGATCCAGTAGCTATTGATGCACCTGGAGGATTTCTTTACGAGTGGTGGTCTGTCTTTTGGGACATCTTCATCTCAAGGACAAATGAGAAACATTCTGAGGCTGCTGCGGCTTACATTGAGACACAGCAAACAAAAGCTAAAGAACAACAACTTCAAATGCAGCAAATGCAACTAATGCAGCAACGCAATGCACAGTTACAGCGAAGAGATCCTAATCATCCTGCCCTTGGTAGTTCCATAAATGCTATGAACACGGAAGGAATGTTGGGGCAGCAACCAGCAAGTGTGTTGGCAATGAAAATGTATGAAGATCGAATGAAACACCCCCAACCAATGGATTCAGAGGCATCTCCAACTCTTATGGATGCTAATAGGATGGCCTTACTCAAATCAGCAGCTAGTCATCAAAGCCAATTGGTTCATGGAAATTCAGGGAATATGTCAACTGCATTGCAGCAAATTCCTGGGCGAACTCCTTTGAACACTGACATCAAAGCCGAAGTTAATTTAGGTGCCCCTCCAAAGAGTGTGCCTATGGATACATCAGTTTATCGGCAAGCAATTTTACAATCAAAATCAGGGCTAGGCAATGCAGGATTAAATCAAGGAGTTACAGGTCTTCCATTGAAGGGTTGGCCTCTAGCATCTGGAATTGATCAACTAAGGCCTAATTTGGGTGTACAAGTTCCAAAGCCCAATTTGACAACCCCGAACCAATTTGTTATGTCATCACAACAGCAACATGTCTTGACACAGAATAACCTTGGAAATTCTAGTTATGGTGACATGGATCCTCGTAGGCTTTCTGGTCTTCCTCGAGGTAGCTTAAGTGCAAAGGATGGTCAGTCTAGCAGAAATGATGGATCTATTTGCTCCCAAATGCAGTCTGATTCACCTAAGATGAAGATGGCTCAGTCACAACATTCATTATCTCAACAGCAGGAACAATTACAGCAACATCAACTGCAGCAGAATAACAGAAAAAGAAAACAACATTCTGGAGCTGCCAATAGCACTGGTACTGGTAACACTGCTGTTCCTTCACCTAATTCACCACCATCAACTCATACACCTGGTGATGGATTAAATACAGCAAACAACATGCAGCATGTTAACAATGTGCAAAAGAGCATGCTGATGTATGGTACAGAGGCAACAGGAGGCCTTGCATCATCGTCAAATTTACTGGAGGACATGGAACGATTTGGAGATGTTGATGCCTTAGATGATAATGTAGAATCCTTTCTATCAAATGATGGCGGAGATGGTGGAAATCTCTATGGAGCAGTGAAACAAAGCCCGGCCGAGCAACAGAAAGAGTCTTCAAAAGGTTTCACCTTTGCAGAATTTGGTAGCATTAGATCAAGGAACAGCAAGGTTACTTGTTGTCACTTTTCTTCTGATGGAAAGTGGCTTGCCAGTGCTGGAGATGACATGAAGGTTGTCTTCTGGAGCATGGACACTTTACAGACAGAGAACAGTCCTGCAGAACACAAAGCAGTTATTACAGATGTCCGTTTTAGACCAAATTCACTTCAGTTGGCAACTGCCTCAATGGATAAATCTGTGCGGTTATGGGACACAACCAATCCTACCCGTTGTGTACAAGAATATAGTGGGCACTCTTCAGCTATAATGTCTCTTGATTTCCATCCTAAGAAGACTGAACTTTTCTGTTTCTGTGATGGAGAAAATGAAATTCGGTATTGGAATATTAATTCGCCCAACTGCTCCCGTGTAACTAAGGGAGGTAATACACAAGTGAGGTTTCAGCCTAGATTGGGGCAGTTCCTAGCAGCACCTTCTGATAAAGGAGTGTCAATTTTTGATGTTGAAACTGACACAAAAATGTACTCCCTGCAGGGTCATCCTGAACCAGTGAACTATATTTGCTGGGATGGGAATGGTGAAGCCTTGGCATCTGTGAGTCTTAATATGGTAAAGATTTGGAGTTTGAACTCAGGAGAATGCATTCAAGAGATCACCTCCACTGGAAGCCAATTTCATTCCTGTGTTTTTCATCCAAGTTATTCAACTTTGTTGGTGATTGGAGGATATTCGTGCTTAGAGTTATGGAACATGAGCGAGAACAAAAGCATGACAATCCTTGCACATGAAAATGTAGTATCTTGCATGGCTCAGTCTTCTGTCACTGGAATGGTTGCCTCTGCAAGTTTTGACAACTATGTAAAGCTGTGGAAATAA 2343 0.4208 MKPTMAQNQSNWEADKMLDVYIYDYLMKRKLHATAKAFVAEGKVATDPVAIDAPGGFLYEWWSVFWDIFISRTNEKHSEAAAAYIETQQTKAKEQQLQMQQMQLMQQRNAQLQRRDPNHPALGSSINAMNTEGMLGQQPASVLAMKMYEDRMKHPQPMDSEASPTLMDANRMALLKSAASHQSQLVHGNSGNMSTALQQIPGRTPLNTDIKAEVNLGAPPKSVPMDTSVYRQAILQSKSGLGNAGLNQGVTGLPLKGWPLASGIDQLRPNLGVQVPKPNLTTPNQFVMSSQQQHVLTQNNLGNSSYGDMDPRRLSGLPRGSLSAKDGQSSRNDGSICSQMQSDSPKMKMAQSQHSLSQQQEQLQQHQLQQNNRKRKQHSGAANSTGTGNTAVPSPNSPPSTHTPGDGLNTANNMQHVNNVQKSMLMYGTEATGGLASSSNLLEDMERFGDVDALDDNVESFLSNDGGDGGNLYGAVKQSPAEQQKESSKGFTFAEFGSIRSRNSKVTCCHFSSDGKWLASAGDDMKVVFWSMDTLQTENSPAEHKAVITDVRFRPNSLQLATASMDKSVRLWDTTNPTRCVQEYSGHSSAIMSLDFHPKKTELFCFCDGENEIRYWNINSPNCSRVTKGGNTQVRFQPRLGQFLAAPSDKGVSIFDVETDTKMYSLQGHPEPVNYICWDGNGEALASVSLNMVKIWSLNSGECIQEITSTGSQFHSCVFHPSYSTLLVIGGYSCLELWNMSENKSMTILAHENVVSCMAQSSVTGMVASASFDNYVKLWK* 781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1295 780 MobiDBLite consensus disorder prediction 274 293 - -
Pvu8g1295 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 541 573 IPR001680 GO:0005515
Pvu8g1295 780 Gene3D - 481 628 IPR015943 GO:0005515
Pvu8g1295 780 Coils Coil 85 115 - -
Pvu8g1295 780 PANTHER TRANSCRIPTION FACTOR WD40-LIKE FAMILY-RELATED 9 780 - -
Pvu8g1295 780 Coils Coil 349 376 - -
Pvu8g1295 780 ProSiteProfiles LIS1 homology (LisH) motif profile. 14 46 IPR006594 GO:0005515
Pvu8g1295 780 Pfam WD domain, G-beta repeat 504 531 IPR001680 GO:0005515
Pvu8g1295 780 Pfam WD domain, G-beta repeat 579 617 IPR001680 GO:0005515
Pvu8g1295 780 Pfam WD domain, G-beta repeat 543 573 IPR001680 GO:0005515
Pvu8g1295 780 SMART WD40_4 700 739 IPR001680 GO:0005515
Pvu8g1295 780 SMART WD40_4 492 531 IPR001680 GO:0005515
Pvu8g1295 780 SMART WD40_4 534 573 IPR001680 GO:0005515
Pvu8g1295 780 SMART WD40_4 659 697 IPR001680 GO:0005515
Pvu8g1295 780 SMART WD40_4 741 780 IPR001680 GO:0005515
Pvu8g1295 780 SMART WD40_4 577 617 IPR001680 GO:0005515
Pvu8g1295 780 SMART WD40_4 620 656 IPR001680 GO:0005515
Pvu8g1295 780 Gene3D - 629 780 IPR015943 GO:0005515
Pvu8g1295 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 584 626 IPR001680 GO:0005515
Pvu8g1295 780 SMART Lish 14 46 IPR006594 GO:0005515
Pvu8g1295 780 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 9 780 IPR044716 GO:0003714
Pvu8g1295 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 748 780 - -
Pvu8g1295 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 499 540 IPR001680 GO:0005515
Pvu8g1295 780 SUPERFAMILY WD40 repeat-like 496 780 IPR036322 GO:0005515
Pvu8g1295 780 ProSiteProfiles Trp-Asp (WD) repeats profile. 748 780 IPR001680 GO:0005515
Pvu8g1295 780 MobiDBLite consensus disorder prediction 322 413 - -
Pvu8g1295 780 Pfam LisH 16 41 IPR006594 GO:0005515
Pvu8g1295 780 MobiDBLite consensus disorder prediction 299 413 - -
Pvu8g1295 780 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 541 573 - -
Pvu8g1295 780 MobiDBLite consensus disorder prediction 275 293 - -
Pvu8g1295 780 CDD WD40 497 780 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1295 Pvu-Chr8 18165716 18174289 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1295 581 779 Miscellaneous Gene Families AT5G08390 22.549 1.59e-09 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Pvu8g1295 WD40 0.035 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1295 - - gmx:100786946 1281.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1295 8 18165716 18174289 Pvu8g1295 8 18165716 18174289 ECH