LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Pvu8g1290	ATGGCTTTGTCGATCACACTCTTTCTTCTAGCATTAATGCATTTGCAAGGTTCATCTTCTTCATCATCGTTGAGAATGGGTTCTTCCCTCTCTGTGGAAAATCCACAAGATACTCTCATCTCACCAAATGCTATCTTCTCTGCTGGTTTTGTTTCCATTGGTGAGAACGCATATTCATTTGCAATATGGTTCACGGAACCTCATTTTCACAGCCCTAACACTGTCACATGGATGGCCAACCGTGACCAACCTGTGAATGGAAAACGCTCCAAACTTTCCCTCACAGACGATGGCAACATACTCTTGATTGATGCTTCTCTTAACACTGTTTGGTCTTCAAACACCGATTCATTAGACCCAGTAGAGTTGCATCTCAAGGATGATGGAAATCTTGTGTTACACCAGCTTCAAGGAACGGTTCTATGGCAAAGTTTTGATTTTCCCACCGATACTCTTGTTCCTGGTCAACCTCTTACCAGATACACACAACTTGTGTCTTCAAGAAGCGAGAGTAACCATTCCTCAGGTTTCTATACGTTTTTATTCGATGATAGCAACGTTCTTGGTCTTCATTATGATGGTCCTGATGTTTCAAGCTCCTACTGGCCACAACCTTGGTTGATAAGTTGGGATGCTGGAAGGACTAATTTCAACAGTAGTAGAATTGGCGTGATGAACTCTCTTGGGATTTTCAATTCAACTGATAATTTCACTTTCGTGACATCTGATTATGGCACAGTGCTGCAGAGAAGGTTGAAAGTGGATTGTGATGGGAATGTTCGAGTGTATAGTCGAAAGAATGTTTTGCAGAAGTGGTATGTTTCATGGCAAGCAATTTCTAGTGGTTGCATACCTCATGGGATTTGTGGACCCAACAGCTTCTGCGTTTATGCTCATGCGAGTGGAAGAAAATGTTTGTGTCTTCCGGGGCATAGATTGAAGAACCACAGTGATTGGTCTCAAGGGTGTGAACCCTTGTTTCAGCTTACTTGCCATGTGAATGAGTCTATGTTCTTGGAGATTCCAAATGTTGAGTTCTATGGCTATGACAATCATTATGTAGAAGTTAGTAACTACAGTGCCTGCCAGAATTTATGCTTGCAAGACTGCAATTGTAAGGGGTTTCAGCACTCCTATAGTGATGATAAACGCTTTTATAGGTGCTATACAAAAACACAATTGCTCAATGGAAAACATTCACCGGTATTCCAAGGAACAACATACTTGAGATTGCCCAAAAGCAATAGCTTCTCTCACAAACAATATGCCAGTGAACCTTTATATGATCATGTTTGTTCTGTTCAACTTCAACGAGCTTATGTCAAACCACATGCAAACCGTTTTGTAAAGATTTTCCTGTGGTTTTCTACAGCCCTTGGAGCTTCTGAAGTGATTTGCGCTTTTGCGATTTGGCGTCTACTAGTTTGGACCAGACAAAAGTCTGACGTTGATCGAGAGGGCTACCATCTTACAGAAACAGGATTCAGAAAGTTTAGCTTATCTGAGCTGAAAAAGGCTACAAAGGGTTTCAGTGAAGAGATAGGAAGAGGTGGGGGAGGGGTTGTGTACAAAGGTATTTTATCAGATCAGAGACATGCAGCAATTAAGAGACTTTATAATGCTAAACAAGGAGAAGGGGAGTTTCTTGCTGAAGTAGGCATCATTGGAAAGCTTAACCACATGAACTTGATTGAAATGTGGGGATATTGTGCTGAGGGAAAACATAGGTTGTTGGTGTATGAGTATATGGAGAACGGTTCTTTAGCAGAAAATCTCTCATCCAACACTCTTGATTGGAGGAAGAGATACAACATAGCTCTTGGAACAGCAAGAGTTTTAGCATATCTGCATGAAGAATGTTTGGAGTGGATTTTGCACTGTGATATAAAGCCACAAAATATACTTCTAGATTCTAACTATGAGCCAAAGTTAGCAGACTTTGGCTTGTCTAAGCTCCTGAACAGAAATAACCCCAACAATCCAAGCATCTCTATGATCAGAGGGACCAGAGGCTATATGGCACCTGAGTGGGTTTTTAACTTGCCTATCACATCCAAGGTGGATGTTTATAGCTATGGAATTGTTGTTTTGGAAATGGTAACTGGGAAAAGCACAACAAGAAGTATCCATAATGAAGAAAGATATGATGGGAGGGTGGTGGAATGGGTGAGAGAGAAAAGAGGGAACAGTAGCTCATGTTGGTTGGAGGAAATAATTGAAGCTGATATTGGAGATGATTATGATCATAGGAAGATGGAAATTTTGAGTAAAGTGGCTTTGAAGTGTGTGATGGAAGACAGAGATTTAAGGCCCACCATGAGCCAAGTAGTTGAGATGCTTCAGTGA	2346	0.4113	MALSITLFLLALMHLQGSSSSSSLRMGSSLSVENPQDTLISPNAIFSAGFVSIGENAYSFAIWFTEPHFHSPNTVTWMANRDQPVNGKRSKLSLTDDGNILLIDASLNTVWSSNTDSLDPVELHLKDDGNLVLHQLQGTVLWQSFDFPTDTLVPGQPLTRYTQLVSSRSESNHSSGFYTFLFDDSNVLGLHYDGPDVSSSYWPQPWLISWDAGRTNFNSSRIGVMNSLGIFNSTDNFTFVTSDYGTVLQRRLKVDCDGNVRVYSRKNVLQKWYVSWQAISSGCIPHGICGPNSFCVYAHASGRKCLCLPGHRLKNHSDWSQGCEPLFQLTCHVNESMFLEIPNVEFYGYDNHYVEVSNYSACQNLCLQDCNCKGFQHSYSDDKRFYRCYTKTQLLNGKHSPVFQGTTYLRLPKSNSFSHKQYASEPLYDHVCSVQLQRAYVKPHANRFVKIFLWFSTALGASEVICAFAIWRLLVWTRQKSDVDREGYHLTETGFRKFSLSELKKATKGFSEEIGRGGGGVVYKGILSDQRHAAIKRLYNAKQGEGEFLAEVGIIGKLNHMNLIEMWGYCAEGKHRLLVYEYMENGSLAENLSSNTLDWRKRYNIALGTARVLAYLHEECLEWILHCDIKPQNILLDSNYEPKLADFGLSKLLNRNNPNNPSISMIRGTRGYMAPEWVFNLPITSKVDVYSYGIVVLEMVTGKSTTRSIHNEERYDGRVVEWVREKRGNSSSCWLEEIIEADIGDDYDHRKMEILSKVALKCVMEDRDLRPTMSQVVEMLQ*	782

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Pvu8g1290	781	PIRSF	SRK	1	781	IPR024171	GO:0004674
Pvu8g1290	781	ProSiteProfiles	Bulb-type lectin domain profile.	15	146	IPR001480	-
Pvu8g1290	781	SMART	blect_4	29	148	IPR001480	-
Pvu8g1290	781	ProSiteProfiles	Protein kinase domain profile.	508	781	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Pvu8g1290	781	ProSitePatterns	Protein kinases ATP-binding region signature.	514	536	IPR017441	GO:0005524
Pvu8g1290	781	Gene3D	Transferase(Phosphotransferase) domain 1	583	781	-	-
Pvu8g1290	781	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	624	636	IPR008271	GO:0004672\|GO:0006468
Pvu8g1290	781	CDD	STKc_IRAK	514	781	-	-
Pvu8g1290	781	Gene3D	Phosphorylase Kinase; domain 1	474	582	-	-
Pvu8g1290	781	Pfam	S-locus glycoprotein domain	234	314	IPR000858	GO:0048544

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Pvu8g1290	Pvu-Chr8	18089228	18091573	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Pvu8g1290	498	780	Trihelix Transcription Factor Family	AT5G38560	40.690	5.19e-61	216

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_SD-2b	Pvu8g1290		Pkinase	9.6e-53	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Pvu8g1290	-		-	gmx:100783758	1222.61

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