Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1270 ATGAAGCAGTTGTCTCTCACACTCTTCACTCTCACCGTTCTGCTTGCGCTGACGCTTTCTGCTGCCACCAACGCACTCAATCAAAATGAGGTCACCAAAGACAAAGCTACAGAATCAAGGGATGTGGTTGGAGATAAGGAGTTGCGAGTTCAGAGCTTGAAGAATTCGTCGATGGCAGAAAGGTTGGAGGATGCTTTGAATGAACATGCAGTTGATAATCCAGAGGAGATTGCTTCTATGGTTGATGAGAGCATACGCAATTCGACGGCTAGAAGGAATCTGAATTTCTTCTCATGCGGGACGGGGAACCCAATCGATGACTGCTGGCGGTGCGACAAGCGGTGGTACCTCCGGCGAAAGCGGCTCGCCAACTGCGGCATCGGCTTCGGCCGCAACGCGATCGGCGGGCGCGATGGCCGCTACTATGTTGTGTCGGACCCGAACGACGACGACCCGGTGAACCCGAAACCGGGGACGCTCCGGCACGCCGTGATCCAGGACCGTCCCCTGTGGATCGTGTTCAAGAGGGACATGGTGATCACGCTGAAGCAGGAGCTGATAATGAACAGCTTCAAGACCATCGACGGACGCGGCGCCAACGTCCATATCGCCTACGGCGCCTGCATTACCGTCCAGTTCATCACGAACGTCATCATCCACGGCCTCCACATTCACGACTGCAAGCAAACGGGCAACGCCATGGTTCGCAGTTCCCCCTCCCACTACGGATGGAGAACGATGGCTGACGGGGATGGCATCTCCATCTTTGGTTCAAGCCACATTTGGATCGACCATAACTCCCTCTCCACTTGCGCTGATGGACTTATCGACGCCGTTATGGGTTCCACTGCCATTACCATCTCCAACAACTACTTCACCCACCACAACGAGGTCATGCTTCTGGGTCACAGTGACTCTTATGTCCGCGACAAGCAGATGCAAGTGACCATTGCTTACAACCATTTTGGGGAGGGACTTATCCAAAGAATGCCCAGATGCAGACACGGGTATTTCCACGTGGTTAACAATGACTATACCCACTGGGTAATGTATGCAATTGGTGGCAGTGCTGAGCCCACAATTAACAGCCAAGGCAACAGATACCTTGCTCCTGTGAATCCTTTTGCCAAAGAGGTGACAAAGAGAGTAGATACTGGTTCATCCGTATGGAAAAGTTGGAATTGGAGATCTGAAGGAGACCTTTTGCTGAATGGAGCCTTTTTCACTTCTTCAGGAGCAGGAGCTGCAGCGAGCTATGCTAGAGCCTCAAGTTTGGGGGCCAAATCATCTTCTTTGGTTGGTACCCTTACCTCTGGAGCTGGTGTTCTTACCTGTCGCAGGGGTAACATGTGTTAA 1356 0.5243 MKQLSLTLFTLTVLLALTLSAATNALNQNEVTKDKATESRDVVGDKELRVQSLKNSSMAERLEDALNEHAVDNPEEIASMVDESIRNSTARRNLNFFSCGTGNPIDDCWRCDKRWYLRRKRLANCGIGFGRNAIGGRDGRYYVVSDPNDDDPVNPKPGTLRHAVIQDRPLWIVFKRDMVITLKQELIMNSFKTIDGRGANVHIAYGACITVQFITNVIIHGLHIHDCKQTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSTCADGLIDAVMGSTAITISNNYFTHHNEVMLLGHSDSYVRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWVMYAIGGSAEPTINSQGNRYLAPVNPFAKEVTKRVDTGSSVWKSWNWRSEGDLLLNGAFFTSSGAGAAASYARASSLGAKSSSLVGTLTSGAGVLTCRRGNMC* 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1270 451 SUPERFAMILY Pectin lyase-like 80 446 IPR011050 -
Pvu8g1270 451 PRINTS Pollen allergen Amb family signature 125 142 IPR018082 -
Pvu8g1270 451 PRINTS Pollen allergen Amb family signature 149 174 IPR018082 -
Pvu8g1270 451 PRINTS Pollen allergen Amb family signature 185 201 IPR018082 -
Pvu8g1270 451 PRINTS Pollen allergen Amb family signature 249 270 IPR018082 -
Pvu8g1270 451 PRINTS Pollen allergen Amb family signature 329 348 IPR018082 -
Pvu8g1270 451 PRINTS Pollen allergen Amb family signature 351 370 IPR018082 -
Pvu8g1270 451 PRINTS Pollen allergen Amb family signature 393 417 IPR018082 -
Pvu8g1270 451 PRINTS Pollen allergen Amb family signature 422 445 IPR018082 -
Pvu8g1270 451 SMART amb_all 177 374 IPR002022 -
Pvu8g1270 451 PANTHER PECTATE LYASE 45 448 - -
Pvu8g1270 451 Pfam Pectate lyase 185 366 IPR002022 -
Pvu8g1270 451 Gene3D - 102 444 IPR012334 -
Pvu8g1270 451 PANTHER PECTATE LYASE 18-RELATED 45 448 IPR045032 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1270 Pvu-Chr8 16788691 16794845 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1270 46 451 Polysaccharide Lyase AT4G13710 78.502 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1270 K01728 - gmx:100809277 791.186
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1270 8 16788691 16794845 Pvu8g1270 8 16788691 16794845 ECH