Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1268 ATGCACAAACCATACTCTTTCTCCTGCATATCATCTGATAGTGCCTTCTTAGAAGCTGACCAGGTTGGCAATGAAGATTCCATTTCCCTCTCTCTTGGCCCTCCTTGCCACCACAAATCCAAACTCTCTAACCCAAAACACTCTTCTGCTATGAATCAGAAAAACCCTAGCTCTGATGATCTGAGTGGTGTAACAGTTGCCCTCCACATTGGCCTTCCCACCACCGTTAGCAAACCTTCTTCCACTCCGATTCATGGTCCATATTGGATCCCTACTACTCAACAAATCCTTATTGGACCCACTCAATTCTCTTGCACAGTCTGTAACAAAACCTTCACCCGTTTCAACAACATGCAGATGCACATGTGGGGACATGGATCAGAGTATAGGAAAGGGACGGAGTCACTGAGAGGGTCAAAAGCAGGTTCTTCGATGCTGAGGATTCCCTGCTACTGCTGTGAAGAGGGTTGCAGAAACAACATAAACTATCCAAGGTCAAGGCCACTGAAGGATTTCAGGACCCTCCAAACACACTACAAAAGGAAGCACGGAGGGAAGCCATTCGAGTGCAGGAAGTGTAGGAAGGCATTTGCAGTGAGAGGGGATTGGAGAACACACGAGAAGAATTGTGGGAAGCTTTGGTTCTGCATCTGTGGTTCTGATTTCAAGCACAAGCGGTCCCTCAAAGACCATGTCCGTGCCTTCGGTAATGGGCATGCTCCACACAGCTTGGGTGGAGAAAGAGGCAGTGAAGATGAGAGGGAAATGGTTGATTTTAGTTTGAAATAA 789 0.4715 MHKPYSFSCISSDSAFLEADQVGNEDSISLSLGPPCHHKSKLSNPKHSSAMNQKNPSSDDLSGVTVALHIGLPTTVSKPSSTPIHGPYWIPTTQQILIGPTQFSCTVCNKTFTRFNNMQMHMWGHGSEYRKGTESLRGSKAGSSMLRIPCYCCEEGCRNNINYPRSRPLKDFRTLQTHYKRKHGGKPFECRKCRKAFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGNGHAPHSLGGERGSEDEREMVDFSLK* 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1268 262 Pfam Zinc finger, C2H2 type 103 122 IPR013087 -
Pvu8g1268 262 MobiDBLite consensus disorder prediction 45 60 - -
Pvu8g1268 262 PANTHER ZINC FINGER PROTEIN WIP2 4 247 IPR043584 GO:0003700|GO:0010468
Pvu8g1268 262 Gene3D Classic Zinc Finger 102 125 - -
Pvu8g1268 262 SUPERFAMILY beta-beta-alpha zinc fingers 173 208 IPR036236 -
Pvu8g1268 262 PANTHER ZINC FINGER PROTEIN WIP6 4 247 - -
Pvu8g1268 262 MobiDBLite consensus disorder prediction 28 60 - -
Pvu8g1268 262 SUPERFAMILY beta-beta-alpha zinc fingers 90 126 IPR036236 -
Pvu8g1268 262 MobiDBLite consensus disorder prediction 245 262 - -
Pvu8g1268 262 ProSiteProfiles Zinc finger C2H2 type domain profile. 103 130 IPR013087 -
Pvu8g1268 262 MobiDBLite consensus disorder prediction 239 262 - -
Pvu8g1268 262 SMART c2h2final6 188 208 IPR013087 -
Pvu8g1268 262 SMART c2h2final6 151 183 IPR013087 -
Pvu8g1268 262 SMART c2h2final6 103 125 IPR013087 -
Pvu8g1268 262 Gene3D Classic Zinc Finger 129 213 - -
Pvu8g1268 262 ProSitePatterns Zinc finger C2H2 type domain signature. 105 125 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1268 Pvu-Chr8 16726101 16727826 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1268 23 244 C2H2 Transcription Factor Family AT1G13290 66.946 1.84e-112 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu8g1268 zf-C2H2 0.0055 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1268 - - vun:114189638 487.263
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1268 8 16726101 16727826 Pvu8g1268 8 16726101 16727826 ECH