Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1266 ATGTCGGGAAGAAGGTCAAGGGCATCAAAGTTGTCTCAGAATGAGATTAATGACCTCGTGTCTAGGTTGCAACTACTTCTTCCCCAAATCAACCAAAGAGACAACTCAAGGCAATCAGCCTCGAAGATCTTGAAAGAAACATGTTGTCACATTAGAAGATTACAGGAAGAGGTGGAACAACTCAGTGAGAGACTTTCAGAGCTCATGGATTCTGTGGATATCAATGACATTGATAGACAAATTTTACAAAACATTTTGCAACAATGTTAA 270 0.3926 MSGRRSRASKLSQNEINDLVSRLQLLLPQINQRDNSRQSASKILKETCCHIRRLQEEVEQLSERLSELMDSVDINDIDRQILQNILQQC* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1266 89 Pfam Helix-loop-helix DNA-binding domain 14 55 IPR011598 GO:0046983
Pvu8g1266 89 Coils Coil 44 71 - -
Pvu8g1266 89 Gene3D - 13 89 IPR036638 GO:0046983
Pvu8g1266 89 PANTHER DNA BINDING PROTEIN 1 88 - -
Pvu8g1266 89 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 1 54 IPR011598 GO:0046983
Pvu8g1266 89 PANTHER DNA BINDING PROTEIN 1 88 IPR044172 -
Pvu8g1266 89 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 14 72 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1266 Pvu-Chr8 16605174 16610190 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1266 8 86 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 47.500 6.26e-18 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Pvu8g1266 HLH 6.6e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1266 - - gmx:100810266 105.145