Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1262 ATGCTTGTGGTTGAGTTTTTGAGGGAATTGCCAATGTCAATGCCGAGGCAAGCCTTGAGCAACCAAAACCACAACCAAATGTCGAGGCAAGCTTTCATCACAAACCATCACCATCACCCTCACCTGCAACACCTTCACTATGTTCTTCTCTTTGCACTTCTTGTTCCTCTTTCCTTTGCTGCAAATGATGAAGTTACTGCATTGGTTTCATGGATGCATATCTCTTCCAAAACTCCTTCAGCCTTTTCTAGTTGGAACCCTTTGGACTCCAATCCTTGCAGTTGGTCTTACATCAAGTGCTCTTCAGCAAACCTTGTCTTAGAGATAACCATTCAAAATGTTGAGCTAGCCCTTCCCTTCCCTTCGAAAATCTCTTCCTTTCCTTTCCTTCAGATATTGGTCATTTCTGGGGCTAATCTCACTGGGACTATCTCACCTGACATTGGAAACTGTTCTGAGCTTAGAGTACTTGACCTTAGCTCCAATAGTCTTGTGGGTGTCATTCCTTCAAGTATTGGGAGGCTCAAAAACCTCCAAAGCTTGAGCTTGAACTCCAATCATCTCACAGGGCAAATCCCAAGTGAGCTTGGTGATTGTGTCAATCTCAAGACCCTTGACATCTTTGATAACAGTCTTAGTGGAGATCTTCCTGTGGAGCTTGGAAAGTTGTCAAATCTGGAGGTTATAAGAGCAGGAGGGAACAGTGGCATTGTGGGGAAGGTTCCAGATGAGCTAGGAGATTGCAGAAATTTGACAGTGTTGGGTCTTGCTGACACAAAAATTTCTGGTTCATTGCCTGCTTCCCTAGGCAGGCTAAGTAGGCTTCAGACCTTGTCTATTTATGGCTCTATGATCTCTGGTGAGATTCCTCCTGAAATAGGGAACTGTTCAGAGCTCGTCAACTTATTTTTGTATGAGAATGACCTCTCTGGTTCCCTGCCAAGAGAGATTGGTATGCTCCAGAAGCTGGAAAAGATGCTGCTGTGGCAAAACAATTTTGTTGGGGACATTCCTGAGGAAATTGGCAACTGCGGAAAGTTGAAGATTCTTGATGTTTCCTTAAATTCTCTCTCTGGTGGAATACCCCGAAGTTTGGGGAAACTCTCAAATCTTGAAGAACTTATGCTGAGTAACAATAACATCTCTGGTTCAATACCACCAGCTCTGTCCAATCTCACAAACCTCGTACAGTTGCAGTTGGATACAAATCAGCTATCAGGTTCTATTCCACCTGGGCTTGGAAGCTTGGCAAAGCTAACAGTGTTTTTTGCTTGGCAGAACAAACTGGAAGGTCCGATTCCATCATCGTTGGGAGGTTGTAGAAGCCTTGAGGCTTTGGATTTGTCATACAATGCACTCACTGATAGCTTACCCCCAGGCCTGTTTAAACTTCAAAATTTAACAAAGCTTCTGCTAATCTCTAATGATATTTCTGGCCCTATTCCTCCTGAGATTGGCAACTGCAGTTCCCTCATTCGCCTCCGGCTTGTAGACAACAGAATCAGTGGGGAGATACCAAGAGAAATTGGCTTCCTTAACAGCCTTTATTTCCTTGATCTGTCTGAAAATCAGTTGACTGGGTCAGTACCACTTGAGATTGGAAACTGTAAAGAACTGCAAATGCTGAATCTAAGCAACAACTCCCTTTCTGGCGCTTTGCCTAGTTATTTGTCTTCTCTCACAAGGCTAGAGGTCTTGGATGTTTCTATGAATAACTTTTCTGGTGAGGTTCCAATGAGTATTGGCCAACTCACTTCACTTCTTAGAGTCATCTTAAGTAGAAACTCTTTCTCTGGGCCAATTCCCTCCTCAATTGGGCAATGTTCAGGTCTTCAGCTGCTAGACCTTAGCAGCAACAATTTTTCAGGGAGCATTCCACCAGAACTTCTTCAAATTGAAGCACTTGATATTTCTCTAAATCTGAGTCACAATGCATTATCTGGAGTGATCCCGCCAGAGATTTCTTCTCTGAAAAAGCTGTCAGTTCTAGACCTTTCACACAACAATCTTGAAGGCGACTTGATGGCCTTTTCAGGGCTCGAAAATCTTGTTTCTCTCAACATTTCCTACAACAAAATCACTGGTTATCTTCCAGACAGCAAGTTATTCCACCAACTATCAGCAACAGATTTGGCTGGAAACCAAGGTTTGTGTCCTAATGGTCATGATTCATGTTTTGTTAGCAGTGCTGCTATTACAAAAATGTTGAATGGTACTAATTCTAAGAGGTCAGAGATAATCAAACTGGCTATTGGACTGCTCAGTGCCTTGATTGTTGCAATGACAATCTTTGGAGTTGTTACTATCTTTCGAGCAAGGAAAATAATTCAAGCAGACAATGATTCTGAGATGGGAGGAGATTCATGGCCTTGGCAGTTCACTCCATTCCAAAAGGTAAACTTCTCTGTGGAGCAAGTCTTAAAGTGTTTGGTGGAATCCAATGTAATTGGAAAGGGGTGTTCAGGGATTGTTTATCGTGCCGAAATGGAAAATGGGGATATCATTGCTGTGAAAAGACTATGGCCAACAACAATAGCTGCTGCAAAATGTGATAATCAAAGTGACAAGTTAGCAGTTAATGGAGGGGTACGTGATTCCTTCTCAGCTGAGGTAAAAACTCTTGGTTCAATTCGCCACAAGAACATTGTAAGGTTCTTGGGTTGCTGTTGGAACAGAAACACAAGGTTGCTTATGTATGATTACATGTCAAATGGGAGTCTAGGAAGTCTACTTCATGAACGAAGTGGCAACTGCTTGGAATGGGACATAAGGTTTCGGATAATACTAGGAGCAGCACAAGGTGTGGCTTATTTGCACCATGATTGTGCTCCTCCCATTGTTCATAGGGACATTAAGGCCAACAACATCCTCATAGGCCCTGAATTTGAACCATACATAGCTGATTTTGGGCTTGCAAAACTTGTAGATGATGGAGATTTTGCTCGATCTTCAAGCACACTAGCAGGTTCCTATGGTTACATTGCTCCTGAGTATGGGTACATGATGAAAATAACAGAGAAAAGTGATGTTTATAGCTATGGCATTGTTGTACTAGAAGTCCTAACAGGGAAGCAACCAATTGATCCAACAATACCTGATGGACTCCATATTGTTGATTGGGTAAGACAGAAAAGAGGTGGAGTTGAAGTGGTGGATGAAAGCTTGAGAGCTCGACCAGAATCTGAAATTGAGGAAATGTTGCAGACCTTAGGAGTGGCTTTGCTGTGTGTGAACTCAAGCCCAGATGACAGACCAACCATGAAAGATGTTGTAGCAATGATGAAGGAAATTAGACAGGAGAGAGAAGAATATGTGAAAGTTGACATGCTTCTTCATGCATCTTCTGCAAATGATCAACAAGATAAAAATCTTTCTAATGAAGAACCAATGTCAATGATAAGCACCAGCAACACAAATCTGCATCTGCATTACTCTCCCCATCGCCCTCAAACACCAAAGTAA 3462 0.4246 MLVVEFLRELPMSMPRQALSNQNHNQMSRQAFITNHHHHPHLQHLHYVLLFALLVPLSFAANDEVTALVSWMHISSKTPSAFSSWNPLDSNPCSWSYIKCSSANLVLEITIQNVELALPFPSKISSFPFLQILVISGANLTGTISPDIGNCSELRVLDLSSNSLVGVIPSSIGRLKNLQSLSLNSNHLTGQIPSELGDCVNLKTLDIFDNSLSGDLPVELGKLSNLEVIRAGGNSGIVGKVPDELGDCRNLTVLGLADTKISGSLPASLGRLSRLQTLSIYGSMISGEIPPEIGNCSELVNLFLYENDLSGSLPREIGMLQKLEKMLLWQNNFVGDIPEEIGNCGKLKILDVSLNSLSGGIPRSLGKLSNLEELMLSNNNISGSIPPALSNLTNLVQLQLDTNQLSGSIPPGLGSLAKLTVFFAWQNKLEGPIPSSLGGCRSLEALDLSYNALTDSLPPGLFKLQNLTKLLLISNDISGPIPPEIGNCSSLIRLRLVDNRISGEIPREIGFLNSLYFLDLSENQLTGSVPLEIGNCKELQMLNLSNNSLSGALPSYLSSLTRLEVLDVSMNNFSGEVPMSIGQLTSLLRVILSRNSFSGPIPSSIGQCSGLQLLDLSSNNFSGSIPPELLQIEALDISLNLSHNALSGVIPPEISSLKKLSVLDLSHNNLEGDLMAFSGLENLVSLNISYNKITGYLPDSKLFHQLSATDLAGNQGLCPNGHDSCFVSSAAITKMLNGTNSKRSEIIKLAIGLLSALIVAMTIFGVVTIFRARKIIQADNDSEMGGDSWPWQFTPFQKVNFSVEQVLKCLVESNVIGKGCSGIVYRAEMENGDIIAVKRLWPTTIAAAKCDNQSDKLAVNGGVRDSFSAEVKTLGSIRHKNIVRFLGCCWNRNTRLLMYDYMSNGSLGSLLHERSGNCLEWDIRFRIILGAAQGVAYLHHDCAPPIVHRDIKANNILIGPEFEPYIADFGLAKLVDDGDFARSSSTLAGSYGYIAPEYGYMMKITEKSDVYSYGIVVLEVLTGKQPIDPTIPDGLHIVDWVRQKRGGVEVVDESLRARPESEIEEMLQTLGVALLCVNSSPDDRPTMKDVVAMMKEIRQEREEYVKVDMLLHASSANDQQDKNLSNEEPMSMISTSNTNLHLHYSPHRPQTPK* 1154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1262 1153 Gene3D Ribonuclease Inhibitor 174 260 IPR032675 -
Pvu8g1262 1153 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RCH1 28 1116 - -
Pvu8g1262 1153 ProSitePatterns Protein kinases ATP-binding region signature. 816 849 IPR017441 GO:0005524
Pvu8g1262 1153 SUPERFAMILY Protein kinase-like (PK-like) 793 1094 IPR011009 -
Pvu8g1262 1153 Gene3D Phosphorylase Kinase; domain 1 794 901 - -
Pvu8g1262 1153 ProSiteProfiles Protein kinase domain profile. 810 1105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g1262 1153 PRINTS Leucine-rich repeat signature 515 528 - -
Pvu8g1262 1153 PRINTS Leucine-rich repeat signature 657 670 - -
Pvu8g1262 1153 SMART serkin_6 810 1094 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g1262 1153 Gene3D Transferase(Phosphotransferase) domain 1 902 1119 - -
Pvu8g1262 1153 ProSiteProfiles Leucine-rich repeat profile. 659 681 IPR001611 GO:0005515
Pvu8g1262 1153 Gene3D Ribonuclease Inhibitor 63 173 IPR032675 -
Pvu8g1262 1153 SMART LRR_sd22_2 416 448 - -
Pvu8g1262 1153 SMART LRR_sd22_2 657 682 - -
Pvu8g1262 1153 SMART LRR_sd22_2 368 394 - -
Pvu8g1262 1153 SMART LRR_sd22_2 175 198 - -
Pvu8g1262 1153 SMART LRR_sd22_2 199 228 - -
Pvu8g1262 1153 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 28 1116 - -
Pvu8g1262 1153 MobiDBLite consensus disorder prediction 1129 1153 - -
Pvu8g1262 1153 Gene3D Ribonuclease Inhibitor 638 725 IPR032675 -
Pvu8g1262 1153 Gene3D Ribonuclease Inhibitor 457 554 IPR032675 -
Pvu8g1262 1153 Gene3D Ribonuclease Inhibitor 261 359 IPR032675 -
Pvu8g1262 1153 Gene3D Ribonuclease Inhibitor 360 456 IPR032675 -
Pvu8g1262 1153 Gene3D Ribonuclease Inhibitor 555 637 IPR032675 -
Pvu8g1262 1153 ProSiteProfiles Leucine-rich repeat profile. 370 393 IPR001611 GO:0005515
Pvu8g1262 1153 Pfam Protein tyrosine and serine/threonine kinase 813 1092 IPR001245 GO:0004672|GO:0006468
Pvu8g1262 1153 SUPERFAMILY RNI-like 134 503 - -
Pvu8g1262 1153 Pfam Leucine rich repeat N-terminal domain 61 101 IPR013210 -
Pvu8g1262 1153 ProSitePatterns Serine/Threonine protein kinases active-site signature. 946 958 IPR008271 GO:0004672|GO:0006468
Pvu8g1262 1153 Pfam Leucine rich repeat 346 405 IPR001611 GO:0005515
Pvu8g1262 1153 Pfam Leucine rich repeat 153 212 IPR001611 GO:0005515
Pvu8g1262 1153 MobiDBLite consensus disorder prediction 1129 1145 - -
Pvu8g1262 1153 SMART LRR_typ_2 512 536 IPR003591 -
Pvu8g1262 1153 SMART LRR_typ_2 440 464 IPR003591 -
Pvu8g1262 1153 SMART LRR_typ_2 584 608 IPR003591 -
Pvu8g1262 1153 SMART LRR_typ_2 368 391 IPR003591 -
Pvu8g1262 1153 SMART LRR_typ_2 320 344 IPR003591 -
Pvu8g1262 1153 SMART LRR_typ_2 657 679 IPR003591 -
Pvu8g1262 1153 SMART LRR_typ_2 175 199 IPR003591 -
Pvu8g1262 1153 SMART LRR_typ_2 392 416 IPR003591 -
Pvu8g1262 1153 SMART LRR_typ_2 680 705 IPR003591 -
Pvu8g1262 1153 SUPERFAMILY L domain-like 458 718 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1262 Pvu-Chr8 16494640 16498892 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1262 59 1110 Receptor kinase-like Gene Family AT5G56040 48.127 0.0 969
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pvu8g1262 PK_Tyr_Ser-Thr 3.3e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1262 - - gmx:100815339 2029.99