Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1261 ATGGAAGATGAACAAACTTTGTCGGTTGCTGAGAGAGAGATGTGGCTGAATAGTGACCAAGATGAGTTTCTGGGTGTCAATGAGGCTTCCATGTTCTACGCCGATTTCCCTCCTCTCCCTGATTTCCCTTGCATGTCGTCATCGTCGTCTTCATCTTCTGCAGCACCACTTCCTCTGAAAACTACGACGTGTTCCACCACAACCACAGCGACCACCGCCACTTCCTCTTCTTCCTCTTCCTCTTCATGGGCCGTCTTGAAGTCAGATGTTGAGGAAGATGTGGAGAAAAACCATTGCAACGGCTCCATGCAAGACCAATTTGATGCAACAGCTTTGTCTTCCACTGCTTCCATGGAGATTTCCCAACAGCAGAACCCTGATCCTGGACTTGGTGGCTCTGTTGGAGAGTGCATGGAGGATGTTATGGATACTTTTGGGTACATGGAGCTTTTGGAGGCCAATGATTTCTTCGATCCTGCCTCAATCTTTCAGAATGAGGAAAGCGAAGACCCTTTAATAGAATTCGGCGTACTGGAGGAACAGGTGTCACTGCAAGAGGAGCAACATGAAATGGTGCATCAGCAAGAGAACACTGAAGAGGATCGCAAGGTTCCAGTGTGTGAAGTTATCAAAGGAGAGGAAGAAGGTGGTGGTGGTGGTGGTGGTCGTGTAGTAGATGATGAAATGAGTAATGTCTTTTTGGAGTGGCTCAAGTCTAACAAGGACAGTGTTTCGGCTAATGACTTGAGGAATGTGAAGCTCAAGAAGGCAACTATTGAAAGCGCAGCAAAGCGTTTAGGGGGAGGAAAAGAAGCTATGAAACAGTTGCTTAAGCTGATTCTTGAGTGGGTTCAAACCAGCCATCTTCAGAATAAACGGCGCAAGGAGAATGGTAGCAATAATAGCAATGCTCTTCAGGCACAGTTTCAGGATCCCAGTGCCCAGACCAAGGAGAACGCGCACACGAGTGGCTCATTTGCACCTGAATCGAACTCGTGTTTCAACAACCAGACACCTTGGTTGAATCCTCAAACTTTTGGGACAGATCAAGCCCCTGTCATGGTTCCATCACAGCCGTATTCACAACCCGTGGTTGGGTATGTGGGTGACCCTTACACTAGTGGTTCTGCTCCAAATAACATCACGGTGAATCATAACCATAACAACAACCCTTACCAACCAGGCACGGACCAATACCACATGTTGGAGTCAGCACATTCATGGCCTCATTCTCAGTTCAACGTGGCTTCTCATTATAGCCAGTCGTATGGGGAAAACGGTCTTTTCACACATGGGGGTTTTGGCGGCTATGCCAATAACCAGTACCCTTATCAGTTTTTTCATGGTCCTGGTGATAGGTTGATGAGGTTAGGCCCCTCTGCAACCAAGGAAGCAAGGAAGAAGAGAATGGCGAGGCAGAGAAGGTTTTTATCTCATCACAGGAATCAAAATGGCAATCACCTCCAGAATCAAGGGTCTGACCCACATGCAAGACTGGGAAATGATAATTGCACCACTGGTTTGGTTGCACCTCATCAGCCAAATTCTGCAGCAGCCAATTGGATGTACTGGCAGGCTATGACGGGTGGCCCGGCTGGTCCTTTGGCCCCGGTGGTTCCCGCCGATCCACTGGCCGGACAAACGGTGGTGGACCGAACCACCATGCACACACAGAATTCTCATCAGAACCGAGCTGCATCCGATAGGAGACAGGGTTGGAAGCCTGAGAAGAACTTGAGATTCCTTCTGCAAAAGGTTTTGAAGCAAAGTGATGTGGGAAGCTTGGGGAGAATAGTTTTGCCAAAAAAAGAAGCAGAAACCCATTTGCCAGAGCTGGAGGCAAGAGATGGAATTTCCATAACAATGGAAGACATTGGAACTTCACGTGTTTGGAACATGCGCTATAGATACTGGCCAAACAACAAAAGCAGAATGTATTTGCTCGAGAACACTGGTGATTTTGTGAGAGCCAATGGACTCCAAGAAGGTGATTTCATAGTCATATACTCAGATGTGAAGTGTGGCAAATATATGATAAGAGGAGTGAAAGTGAGGCAACAAGGTGTGAAACCAGAGACCAAAAAAGCAGGGAAATCGCAGAAAAACCAGCATGGGACTAATGCATCAAATACAGCTGGAACTGCTGCTAATAATGGCAGGTCATCGCCACCGAAACCAAAAGCTGAAAAAAAAGTAGCAAATTAG 2205 0.4721 MEDEQTLSVAEREMWLNSDQDEFLGVNEASMFYADFPPLPDFPCMSSSSSSSSAAPLPLKTTTCSTTTTATTATSSSSSSSSWAVLKSDVEEDVEKNHCNGSMQDQFDATALSSTASMEISQQQNPDPGLGGSVGECMEDVMDTFGYMELLEANDFFDPASIFQNEESEDPLIEFGVLEEQVSLQEEQHEMVHQQENTEEDRKVPVCEVIKGEEEGGGGGGGRVVDDEMSNVFLEWLKSNKDSVSANDLRNVKLKKATIESAAKRLGGGKEAMKQLLKLILEWVQTSHLQNKRRKENGSNNSNALQAQFQDPSAQTKENAHTSGSFAPESNSCFNNQTPWLNPQTFGTDQAPVMVPSQPYSQPVVGYVGDPYTSGSAPNNITVNHNHNNNPYQPGTDQYHMLESAHSWPHSQFNVASHYSQSYGENGLFTHGGFGGYANNQYPYQFFHGPGDRLMRLGPSATKEARKKRMARQRRFLSHHRNQNGNHLQNQGSDPHARLGNDNCTTGLVAPHQPNSAAANWMYWQAMTGGPAGPLAPVVPADPLAGQTVVDRTTMHTQNSHQNRAASDRRQGWKPEKNLRFLLQKVLKQSDVGSLGRIVLPKKEAETHLPELEARDGISITMEDIGTSRVWNMRYRYWPNNKSRMYLLENTGDFVRANGLQEGDFIVIYSDVKCGKYMIRGVKVRQQGVKPETKKAGKSQKNQHGTNASNTAGTAANNGRSSPPKPKAEKKVAN* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1261 734 MobiDBLite consensus disorder prediction 482 508 - -
Pvu8g1261 734 Pfam B3 DNA binding domain 584 680 IPR003340 GO:0003677
Pvu8g1261 734 Gene3D - 579 698 IPR015300 -
Pvu8g1261 734 SMART B3_2 583 685 IPR003340 GO:0003677
Pvu8g1261 734 MobiDBLite consensus disorder prediction 479 508 - -
Pvu8g1261 734 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 725 IPR044800 GO:0003700
Pvu8g1261 734 MobiDBLite consensus disorder prediction 309 334 - -
Pvu8g1261 734 MobiDBLite consensus disorder prediction 700 721 - -
Pvu8g1261 734 ProSiteProfiles B3 DNA-binding domain profile. 583 685 IPR003340 GO:0003677
Pvu8g1261 734 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 725 - -
Pvu8g1261 734 CDD BfiI_C_EcoRII_N_B3 581 682 - -
Pvu8g1261 734 MobiDBLite consensus disorder prediction 687 734 - -
Pvu8g1261 734 SUPERFAMILY DNA-binding pseudobarrel domain 582 678 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1261 Pvu-Chr8 16479360 16482458 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1261 12 716 B3 DNA Binding Superfamily AT3G24650 45.953 1.50e-161 482
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Pvu8g1261 B3 3.4e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1261 - - pvu:PHAVU_008G122100g 1392.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1261 8 16479360 16482458 Pvu8g1261 8 16479360 16482458 ECH