Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1232 ATGATTGAGTCAGCCATGTCAAAGACAATGATGGAGGAAGTAATGGCGACTTGGTCAGAGGGGTCAGAGGATGATGACCTTGTGAAAGAGCTTTTGGATGATGGGTCTCCCCTTCTTGTGCTTCCACAGGAGGCAATTCAACCCCCCATAACAAACGCCTCTTCAAGTGACCATGCCTTTAATAGGTTCCTCTCCAACATTTACTCAGGACCTACTATCTCAGATATTGAAAATGCTTTGTCACTGAACAACCAAAGAGACCACTTCCCACCACTCTCATCACCCAGCAGAGTTTCCATTTTGGAGAAGGGTTTGAGCAAGATTGAGAATAAGTATACCCTCAAAATCAAATGCTTTGGCAATGGGATGGGAGATGATGGATACAAGTGGAGGAAGTATGGACAGAAATCCATTAAGAATAGCCCAAATCCTAGGAGTTACTATAGGTGCACAAACCCAAGGTGCAGTGCCAAGAAGCAGGTTGAGAGGTCCATTGAGGACCCAGACACTCTTATCATAACCTATGAAGGGCTCCACTTGCACTTTGCTTACCCATATTTCCTCATGGGCCAACCACACCAATCTCAATCTCATCCACCCATCAAGAAGTCCAAGCCCACTTCTTCCCAGGGCCCAGCCCAAGCCCATAGATCAGATTATGTTCGTGAAGCCCAGGAAACCCAAACAAATGCCACTTCGGGTGTGGTGCCATCCACTTCATTGGACTCTCCACAGGATATGGCCCAGCCAAACATGGGCTCACAAGGGTTGCTTGAAGATATGGTGCCATTCATGATTCGGAACCCAACAAACGATGTGAACAGTGCTCACACAAAATTTTCTTGTTCTACGTTTCGTTCTCCTCCAACTTCACCTCTGTGGGGTTCTAACTACTCCACCTCCTGCTACACCGTTGGCTTAAATTCTAGCACCTAA 936 0.4669 MIESAMSKTMMEEVMATWSEGSEDDDLVKELLDDGSPLLVLPQEAIQPPITNASSSDHAFNRFLSNIYSGPTISDIENALSLNNQRDHFPPLSSPSRVSILEKGLSKIENKYTLKIKCFGNGMGDDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSIEDPDTLIITYEGLHLHFAYPYFLMGQPHQSQSHPPIKKSKPTSSQGPAQAHRSDYVREAQETQTNATSGVVPSTSLDSPQDMAQPNMGSQGLLEDMVPFMIRNPTNDVNSAHTKFSCSTFRSPPTSPLWGSNYSTSCYTVGLNSST* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1232 311 SUPERFAMILY WRKY DNA-binding domain 122 181 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu8g1232 311 ProSiteProfiles WRKY domain profile. 119 184 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu8g1232 311 MobiDBLite consensus disorder prediction 193 215 - -
Pvu8g1232 311 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 16 278 IPR044810 GO:0003700
Pvu8g1232 311 Pfam WRKY DNA -binding domain 125 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu8g1232 311 Gene3D WRKY domain 120 177 IPR036576 GO:0003700|GO:0006355|GO:0043565
Pvu8g1232 311 PANTHER WRKY TRANSCRIPTION FACTOR 49-RELATED 16 278 - -
Pvu8g1232 311 SMART WRKY_cls 124 183 IPR003657 GO:0003700|GO:0006355|GO:0043565
Pvu8g1232 311 MobiDBLite consensus disorder prediction 193 255 - -
Pvu8g1232 311 MobiDBLite consensus disorder prediction 224 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1232 Pvu-Chr8 15127288 15130305 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1232 11 272 WRKY Transcription Factor Family AT5G43290 42.756 3.25e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Pvu8g1232 WRKY 2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1232 - - gmx:100810459 497.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1232 8 15127288 15130305 Pvu8g1232 8 15127288 15130305 ECH