Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1224 ATGGCATCGTTGGGATCTTCTTCTTCTTCATTCTGGTGCTACCGATGCAACCGCGTCGTTAGGGTTTCCCTCGCTACAGAAGGGCAGCCAGATCCTACCATTCTCTGCCCCGATTGCCACTCCGGTTTCCTCGAAGAGCTCCACACGCCTCCCCACTCGCGTCGATCCACGCGCGCCGGGTCGCCCTTCAATCCCGTCATCATGCTGCGCGGCGGGGGCGGGAACGGAAACGAAAACGAAAACGCAAACGCCAACGAAAACGAAAACGACGTCGCCTCGGGGAACTTCGAGCTCTACTACAACGAGGGGGTTTCTGGTCCGGGCCCTCTACGCCCGCTGCCGGCCGGCGTGACCGACTTTCTGATGGGCTCGTCGGGCTTCGACCACTTGCTGGACCAGCTGGATGGCACCGCGGTGCGCCTCGACCGGGCGGCGTCGAAGGCGGCGATCGAGTCGATGCCGGTGGTGAAGATCCTGGCGAGCCACGCGCACGCGGAGTCCCACTGCGCGGTGTGCATGGAAAATTTTCAAGTGGATTGCGACGCACGGGAGATGCCGTGCGGGCACGTATATCACTCGGAGTGCATCGTGCCGTGGCTCTCCGTGCGGAACTCGTGCCCCGTGTGCCGGCGCGTGGTTCCTTCCGATGAAGTCCATGATAACAATTCGATGGGGTTAACCATATGGAGACTCCCTGGGGGAGGATTCGCTGTGGGCAGGCTCATCGGAGGTAGAGAACTCCCCCTCGTGTACACGGAGATGGACGGCGCGTTTAACGCCTCTAACGGCGTTCCGAGGAGAGTCTCCTGGGATTCGTCTATTGGTAGGTCTAGGGAGAGTAGGGGGTTTGCTTCTGCTTTTCGGAATCTCGTTTCCTATTTCGGAAGAGTTAGGAGTTCCTTTTCTCGTGGAACGAGAAACTCGCGTGTCAATGGAAGATCACGCTCTGCCACAACCATTTTTTCTAGGTTCAGGAGTCGATCAAGATTTTAA 993 0.5861 MASLGSSSSSFWCYRCNRVVRVSLATEGQPDPTILCPDCHSGFLEELHTPPHSRRSTRAGSPFNPVIMLRGGGGNGNENENANANENENDVASGNFELYYNEGVSGPGPLRPLPAGVTDFLMGSSGFDHLLDQLDGTAVRLDRAASKAAIESMPVVKILASHAHAESHCAVCMENFQVDCDAREMPCGHVYHSECIVPWLSVRNSCPVCRRVVPSDEVHDNNSMGLTIWRLPGGGFAVGRLIGGRELPLVYTEMDGAFNASNGVPRRVSWDSSIGRSRESRGFASAFRNLVSYFGRVRSSFSRGTRNSRVNGRSRSATTIFSRFRSRSRF* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1224 330 Pfam zinc-ribbon 10 47 IPR039525 GO:0061630
Pvu8g1224 330 SMART ring_2 169 209 IPR001841 -
Pvu8g1224 330 Pfam Protein of unknown function (DUF1117) 224 323 IPR010543 -
Pvu8g1224 330 SUPERFAMILY RING/U-box 149 216 - -
Pvu8g1224 330 Pfam Ring finger domain 168 210 IPR001841 -
Pvu8g1224 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RDUF2 9 279 - -
Pvu8g1224 330 ProSiteProfiles Zinc finger RING-type profile. 169 210 IPR001841 -
Pvu8g1224 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 216 IPR013083 -
Pvu8g1224 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1224 Pvu-Chr8 14963530 14964980 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1224 112 217 C3H Transcription Factor Family AT5G01980 41.667 3.41e-20 89.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1224 - - gmx:121172634 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1224 8 14963530 14964980 Pvu8g1224 8 14963530 14964980 ECH
Pvu1g2414 1 49487245 49488567 Pvu8g1224 8 14963530 14964980 ECH