Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1222 ATGTCGTTGCACCGTGGTGAAGAAGACGAGCTCTACGAGCAGCTATGGAAGGCGTGTGCAGGACCCCATGTGGAAATTCCTCGTGCTGGCCAAAGGGTCTTCTACTTCCCTCAGGGACACATGGAACAGTTAGAAGTATCAACAAATCAGGAACTAAATCAAAGGATTCCACTGTTCAAACTTCCCTCCGAGATCCTTTGCCGTGTCGTCAACGTCCATTTACTGGCTGAACAAGAAACAGATGAGGTTTATGCACAGATTACTCTGGTGCCGGAAAATAATCAAACTGAGCCTACATGCCCTGATCCGTGCCCTTCTGAAGTTCCAAGGCCAAGAGTTCACTCCTTCTGCAAGGTCTTAACCGCCTCTGATACAAGCACCCACGGTGGCTTCTCTGTCCTCCGGAAGCATGCCACTGAATGTCTTCCAGCATTGGACATGTCGAAATCAACCCCAACTCAAGAATTGGTTGCTAAGGATCTTCATGGATATGAATGGCGCTTTAAGCATATATTTAGAGGTCAGCCGCGCAGACACTTGCTCACAACCGGATGGAGTACTTTTGTGACTTCCAAGAGATTAGTTGCTGGAGACACCTTTGTGTTTTTGAGAGGGAGCAATGGAGAACTGCGAGTTGGAGTGAGGCGTCTTACTCCTGTTCAAAACAGCATGCCATCATCTGTGATTTCTAGTCAGAGCATGCACCTAGGAGTTCTTGCAACTGCATCTCATGCGGTAGCAACTCAGACTCTTTTTGTTGTATATTATAAGCCAAGGACAAGCCAGTTTATTGTAAGTGTGAACAAGTATTTAGAGGCTATCAACCAAAAATGTAATGTTGGCATGAGATTGAAGACGAGGTCTGAAGGGGATGATTCTACTGAAACAGACAAAAGATTTTCGGGCACAATAATTGGAGTTGAGGATATTTCCCCTCATTGGGTAAATTCAAAATGGCGATCACTCAAGGTTCAATGGGATGAACCTCCATCTTTTCCAAGACCTGATAGAGTTTCACCATGGGAGATAGAACCCATTCTGGCTTCTGTTCCTACAACAATATCATCTCAACCTGTTGTTATAAAGAATAAAAGGCCTCGACAAGCAAGTGAAGTTCCAGATCTTGGAGACACACCATTAATTGCCCCTACTTTCTGGGATGCTGGTCTGACACAGTCTGATATTACACAACTTGGTGTTATGGCCGAAAGCAAAAGGAGTGAAAGTAGTGCTCACATGTGGCATCATAACAGCAGCAATGGTATATCAATGAATCAGATAAAAGCAAGTTGGCTGTCTTGTCCTTCTCATTTATATCTTGACACAACTGATGATAGCAAGAGCGTATCAGCTTCGCCTATTTCAAAAACTCACTCGGAAAGATTGAACAATGACCATTGCCTTGACCAGGTTGACAAGGAGATCAGCAAAGTAGAGCCTGCAACCGGCTGCAGATTGTTTGGGATTGACCTTATTGATCATACAAGGAGCAGCTCTCTTTCTGTAGATAATGCATCTGGAGTCACATCGGAGGGCAGAACTGATGTAAACCATGAGCCTGATATCTCAAAGGCTTCTAAAGGATGGAAACAAGAACAGCTACAAGTATCCCCAAAAGAGACTCAAAGCAAGCAAATTTGTAGCAGAAGTTGCACTAAGGTTCAAATGCAGGGGGTTGCAGTGGGTCGTGCTGTGGACTTGACCACATTGGATGGGTATGAGAAACTTGTAGATGAATTGGAGAAGATGTTTGACATAAAGGGACAGCTTCGACACAGGAACAAGTGGGAAATTGTCTTCACTGATGATGAAGGGGATATGATGCTTGTTGGTGATGATCCATGGCCTGAATTCTGTAATATGGTGAGAAGAATCTTCATTTGCTCCAGTCAGGATGTGCACAAACTGAGCTCTGGGAGCAAACTACCTATTTTTTCAACGGAAGAGATTGTAATAAGCTCAGACACAACTGAGATCTGA 1980 0.4424 MSLHRGEEDELYEQLWKACAGPHVEIPRAGQRVFYFPQGHMEQLEVSTNQELNQRIPLFKLPSEILCRVVNVHLLAEQETDEVYAQITLVPENNQTEPTCPDPCPSEVPRPRVHSFCKVLTASDTSTHGGFSVLRKHATECLPALDMSKSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFLRGSNGELRVGVRRLTPVQNSMPSSVISSQSMHLGVLATASHAVATQTLFVVYYKPRTSQFIVSVNKYLEAINQKCNVGMRLKTRSEGDDSTETDKRFSGTIIGVEDISPHWVNSKWRSLKVQWDEPPSFPRPDRVSPWEIEPILASVPTTISSQPVVIKNKRPRQASEVPDLGDTPLIAPTFWDAGLTQSDITQLGVMAESKRSESSAHMWHHNSSNGISMNQIKASWLSCPSHLYLDTTDDSKSVSASPISKTHSERLNNDHCLDQVDKEISKVEPATGCRLFGIDLIDHTRSSSLSVDNASGVTSEGRTDVNHEPDISKASKGWKQEQLQVSPKETQSKQICSRSCTKVQMQGVAVGRAVDLTTLDGYEKLVDELEKMFDIKGQLRHRNKWEIVFTDDEGDMMLVGDDPWPEFCNMVRRIFICSSQDVHKLSSGSKLPIFSTEEIVISSDTTEI* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1222 659 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Pvu8g1222 659 PANTHER AUXIN RESPONSE FACTOR 1 648 - -
Pvu8g1222 659 SMART B3_2 116 218 IPR003340 GO:0003677
Pvu8g1222 659 MobiDBLite consensus disorder prediction 500 535 - -
Pvu8g1222 659 Pfam AUX/IAA family 594 636 IPR033389 -
Pvu8g1222 659 Pfam AUX/IAA family 538 585 IPR033389 -
Pvu8g1222 659 Pfam B3 DNA binding domain 116 216 IPR003340 GO:0003677
Pvu8g1222 659 Gene3D - 113 217 IPR015300 -
Pvu8g1222 659 Gene3D - 545 637 - -
Pvu8g1222 659 ProSiteProfiles PB1 domain profile. 549 630 IPR000270 GO:0005515
Pvu8g1222 659 CDD B3_DNA 114 216 IPR003340 GO:0003677
Pvu8g1222 659 Pfam Auxin response factor 242 323 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Pvu8g1222 659 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 648 IPR044835 GO:0003677|GO:0006355|GO:0009725
Pvu8g1222 659 SUPERFAMILY CAD & PB1 domains 552 625 - -
Pvu8g1222 659 Gene3D - 277 350 - -
Pvu8g1222 659 SUPERFAMILY DNA-binding pseudobarrel domain 107 245 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1222 Pvu-Chr8 14885029 14890156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1222 4 648 B3 DNA Binding Superfamily AT4G23980 58.133 0.0 702
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Pvu8g1222 AUX_IAA 2.6e-13 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1222 K14486 - gmx:100799088 1150.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1222 8 14885029 14890156 Pvu10g0119 10 1784429 1789031 PCT