Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1210 ATGGAGGAGGGTCAATGTTTGATCAGGAGTAAGAGAAAGTACTCTATGAGTCTTAGTCTTGATGATTCTTCGACTAATTACCCTTCCAATGAAGACCACTCATGGGAAGAGCAAGCCTTTGCTAAAGATGCAGCTTGGTCTGGTTGCGTGTGGCCACCACGATCATATTCTTGTACCTTTTGCACAAGAGAATTTAGGTCAGCACAGGCTTTAGGAGGCCATATGAATGTTCATAGAAGAGATAGAGCAAGACTAAAGCAGCCATATAGTCCTCAGAATGAAATCCTCAATGATGATCTTGAGAAAACTCAAACCCAGAATTCGGTTCAAATTTCTTTTACTTCATTGGGTTACTTATACCCACCTTCTCTTAGTGGATTGGCTCATAACACTAACCCTAATTCTGATCCTTATTCTCATGTTGTTGCTTCACCTTCCAATGTTTTAGGCACTTCACTTAACAAAAGATGCAGAGAGAAACCCCAGATTCCACTATACAATAATTCTTCAATTTTCAAAGGATGTCACGAGTCTTCCCCTTCTTTTTCTTCTAAATCCTTGTCAAATTTAACTGATGACTTCAGATTTTGTTCAAGTAGGCTCGATCTTGAAGCCAGTTTTGAGAAAAAATTACAGGGATTGGATTCTGGGTGTAGGAAGGGTAAAACTGAGGTGGCTGTGAGCATGAACATGTTTATGAGTCGAGCTCACCCAGTTGTGCAGTTTGAGAATAAAGAGATAGATACAAGTTTCAAGAACAGAAAATCAGACGCTTCATCCATTCCATTGTTCCCCAAATCATGTTCAGTTGATAAGCATCATGTGCAGTCAGAGATGTTTGATTTTAGCCCTAGCTCCATAGAAGAGCTAGATCTGGAGCTAAGGCTTGGTTATAGGTCCGAGGTATAG 909 0.4026 MEEGQCLIRSKRKYSMSLSLDDSSTNYPSNEDHSWEEQAFAKDAAWSGCVWPPRSYSCTFCTREFRSAQALGGHMNVHRRDRARLKQPYSPQNEILNDDLEKTQTQNSVQISFTSLGYLYPPSLSGLAHNTNPNSDPYSHVVASPSNVLGTSLNKRCREKPQIPLYNNSSIFKGCHESSPSFSSKSLSNLTDDFRFCSSRLDLEASFEKKLQGLDSGCRKGKTEVAVSMNMFMSRAHPVVQFENKEIDTSFKNRKSDASSIPLFPKSCSVDKHHVQSEMFDFSPSSIEELDLELRLGYRSEV* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1210 302 Pfam C2H2-type zinc finger 56 80 - -
Pvu8g1210 302 SMART c2h2final6 56 78 IPR013087 -
Pvu8g1210 302 SUPERFAMILY beta-beta-alpha zinc fingers 53 82 IPR036236 -
Pvu8g1210 302 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 301 - -
Pvu8g1210 302 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
Pvu8g1210 302 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Pvu8g1210 302 PANTHER OS07G0101800 PROTEIN 1 301 - -
Pvu8g1210 302 Gene3D Classic Zinc Finger 52 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1210 Pvu-Chr8 14650951 14652029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1210 29 87 C2H2 Transcription Factor Family AT2G37740 76.271 9.58e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Pvu8g1210 zf-C2H2_6 1.6e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1210 - - vra:106758996 536.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1210 8 14650951 14652029 Pvu8g1210 8 14650951 14652029 ECH
Pvu8g1210 8 14650951 14652029 Pvu8g2392 8 54586549 54587394 ECH