Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1179 ATGGCTGAGGGTTTTGAGCATTACCATGTCCCACAACAAAGTAGGAGGGACAAGTTAAGAGTTTTCGCTCAGAACCAACCTTCTTTCGTTGAATCTTCCTCTATCCTTCATCCCACTTGTCCACCTTTAACCTCTCTCTACGATCCTTCTCTTATTCCCTCTGATTTGTTAGCTTGTGCCACCCAACAAGGTGCCGCTGCTAAGGGAGAAGGTTCCAATTTGATGATGGGGTTTGTGGAAGGGGGGGTTGTCAATGGTGATGCAATTCATGTTATCAACAGTAATAGCAACCACCACAACAACAACCCTTTTCTCTATCAGATTCAGAACCTTAGGGAATTTGGTGATGGCTACAATGATGCGAGTGAAATGATGGTGTTCAAGCCTGAGCCTTTGTCTTTGTCTTTGTCTTCCCAGACTAACAACACTCATCACCCTTTGGAACTGAATCTTCAGCGATTTGGGGCTGTTATTCCAGGTTTGGTTGGAAGGAACAGTGAGGTTTCGAGGAATTCGGTTCCACTTGGACCCTTTACGGGGTATGCTTCGATATTGAAGGGATCGAGGTTCCTGAAACCTGCACAGCAATTATTGGAAGAGTTGTGTGATGGCGGGGTTCGTGGAATTTACGCTACCGAGAAGTCTCTTGCTCCTGATGCATCGTTGATGGAACCTCCTCATGAGGGTTTGAGTGCTAGTGGAGTTGTTGGTGGGGATGATCCACTTGGGGAATACGAGAATGAGAGTAGGAAGAAGAAGTGTAGATTATTAACCATGCTTGACGAGGTTTACAGGAGGTACAGGCATTATTATCAACAGATGCATGCAGTGATAACTTCATTTGAGTATGTTTCTGGTCTTGGTAATGCAGCCCCATTTGCAAGTTTGGCTATAAATGCAATGTCCAAACATTTTAAAGGCTTGAAGAGTGCTATCACTGACCAGCTTCAGTTCATCAACAAGGCTCCTTTTCAGATTAGTAACAGAAAGGATGAATCTCCAAGGTTGCACAGCAGTGATAGGGGCACTTACAGCCAAAGGCCAGGGTTTCTTGAGCACCAACAACCAGTTTGGCGACCTCAAAGAGGACTTCCTGAGCGTGCTGTCAGTGTTCTCAGGGCCTGGTTGTTTGAACACTTTCTTCATCCTTATCCTACTGATACCGACAAGATAATGTTGGCTAAACAAACTGGTCTATCTCGCAACCAGGTGTCTAATTGGTTTATTAATGCAAGAGTAAGGCTTTGGAAACCAATGGTGGAAGAGATACATATGCTAGAATCACAGCAAGCTCAGAAAAGGCCACAGAGGGAAGAACAAAATAGGAGAAACTTAAGTGTTGATCATTTACCTTCAGACAACTCTCTTGTTACTGAGAATCCATCATCCTCCATGGAGAAGTTTCAGGATACCCTTTATAAACAACACAGAAATGAAATTGCTAATATGCAAGTGAGGGGTCAGGAACAGCTGAATCAAACTAACACGAGAAATCAGCAAGTGGGTGTTGGAGTGAGCATGGGGAGTGGTGGTGGTGGGGCAAGTAGTAATAATGGTGTGTCTCTCACACTTGGTCTTCATCAAAATCATGGTATTGGGTTGTCTGAGCCCTTTGGCATGAGTGCAGCTCAACGTTTTGGTGTTACCCTTCAGCCTGAGGGCTATGTTATAAGTGGTTTTGAATCACAAAATCGACATTTTGGAAGAGATGTTATTGGAGGAGGGCAACTGTTGCATGATTTTGTAGGCTGA 1752 0.4429 MAEGFEHYHVPQQSRRDKLRVFAQNQPSFVESSSILHPTCPPLTSLYDPSLIPSDLLACATQQGAAAKGEGSNLMMGFVEGGVVNGDAIHVINSNSNHHNNNPFLYQIQNLREFGDGYNDASEMMVFKPEPLSLSLSSQTNNTHHPLELNLQRFGAVIPGLVGRNSEVSRNSVPLGPFTGYASILKGSRFLKPAQQLLEELCDGGVRGIYATEKSLAPDASLMEPPHEGLSASGVVGGDDPLGEYENESRKKKCRLLTMLDEVYRRYRHYYQQMHAVITSFEYVSGLGNAAPFASLAINAMSKHFKGLKSAITDQLQFINKAPFQISNRKDESPRLHSSDRGTYSQRPGFLEHQQPVWRPQRGLPERAVSVLRAWLFEHFLHPYPTDTDKIMLAKQTGLSRNQVSNWFINARVRLWKPMVEEIHMLESQQAQKRPQREEQNRRNLSVDHLPSDNSLVTENPSSSMEKFQDTLYKQHRNEIANMQVRGQEQLNQTNTRNQQVGVGVSMGSGGGGASSNNGVSLTLGLHQNHGIGLSEPFGMSAAQRFGVTLQPEGYVISGFESQNRHFGRDVIGGGQLLHDFVG* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1179 583 SMART HOX_1 358 422 IPR001356 GO:0003677
Pvu8g1179 583 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 85 557 - -
Pvu8g1179 583 Gene3D - 361 423 - -
Pvu8g1179 583 MobiDBLite consensus disorder prediction 427 446 - -
Pvu8g1179 583 SUPERFAMILY Homeodomain-like 360 425 IPR009057 -
Pvu8g1179 583 CDD homeodomain 358 419 IPR001356 GO:0003677
Pvu8g1179 583 MobiDBLite consensus disorder prediction 329 352 - -
Pvu8g1179 583 ProSiteProfiles 'Homeobox' domain profile. 355 418 IPR001356 GO:0003677
Pvu8g1179 583 MobiDBLite consensus disorder prediction 447 465 - -
Pvu8g1179 583 Pfam Homeobox KN domain 375 414 IPR008422 GO:0003677|GO:0006355
Pvu8g1179 583 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 85 557 - -
Pvu8g1179 583 SMART prehox3 179 314 IPR006563 -
Pvu8g1179 583 Pfam Associated with HOX 184 313 IPR006563 -
Pvu8g1179 583 MobiDBLite consensus disorder prediction 427 465 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1179 Pvu-Chr8 13787534 13793695 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1179 1 583 Homeobox Transcription Factor Family AT5G02030 45.089 3.83e-123 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Pvu8g1179 POX 7.3e-35 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1179 - - vun:114185080 1034.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1179 8 13787534 13793695 Pvu8g1179 8 13787534 13793695 ECH