Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1160 ATGGACACCTTGCAGATGTCCCGTGTTGATTTGGAGCAAGGAAACCATCGCCGTTCGGTTGTTGGAAGTGATGTTAGCGGTGAAGGGAGCTTATGCTTCTCTGATGCTGATGATGGTTCTTGCTACTCCCGTTTCTACTCAACAAATGGTGGTTCATATGATGATTACAGCTTTGCTTGTGTTTCTGATCCTGAGGCTGGGGGTGTTTCTCATTCTGGGAGAGCTTCTTCTGTTTCTGAGTGCTCTGTGGAGGTGGAAACTAGAACTGGGGTTCCTGAGATCAAAGTGCATTTGGCTAGAGTGGAGAAGGATTGTAGGATTTGTCACATGGGTTTGGAGAGTGATAGCCATGAGTCTGGTGCCCCCATAGAATTGGGTTGTTCCTGTAAGGATGATTTGGCTGCTGCTCACAAGCACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGGACTTGTGAAATTTGTCATTCTGTTGCTCGGAATGTTTATGGAACAAACGAGGATTCGACAGAGCATGTTAGTGACGGCAACAATGCTACTACAGCAGCAGCCACACTCTCCACACCTGCTCCTTCTACAGAACCTCGAAGATTTTGGCACGGCCATCGCTTCCTCAATTTCTTGCTTGCTTGCATGGTTTTTGCATTTGTGATATCATGGCTTTTCCACTTTAATGTGCCATCATCGTAG 693 0.4661 MDTLQMSRVDLEQGNHRRSVVGSDVSGEGSLCFSDADDGSCYSRFYSTNGGSYDDYSFACVSDPEAGGVSHSGRASSVSECSVEVETRTGVPEIKVHLARVEKDCRICHMGLESDSHESGAPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVYGTNEDSTEHVSDGNNATTAAATLSTPAPSTEPRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1160 230 ProSiteProfiles Zinc finger RING-CH-type profile. 97 163 IPR011016 GO:0008270
Pvu8g1160 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 94 166 IPR013083 -
Pvu8g1160 230 SMART ringv_2 104 157 IPR011016 GO:0008270
Pvu8g1160 230 SUPERFAMILY RING/U-box 102 160 - -
Pvu8g1160 230 CDD RING_CH-C4HC3_MARCH 105 157 - -
Pvu8g1160 230 PANTHER OS01G0850200 PROTEIN 6 229 - -
Pvu8g1160 230 PANTHER ZINC FINGER, RING-CH-TYPE 6 229 - -
Pvu8g1160 230 Pfam RING-variant domain 105 156 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1160 Pvu-Chr8 13342605 13345724 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1160 69 230 C3H Transcription Factor Family AT5G05830 61.350 3.48e-67 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1160 - - gmx:100808666 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1160 8 13342605 13345724 Pvu8g1160 8 13342605 13345724 ECH
Pvu8g1160 8 13342605 13345724 Pvu8g2355 8 54123895 54126428 ECH