Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu8g1160 | ATGGACACCTTGCAGATGTCCCGTGTTGATTTGGAGCAAGGAAACCATCGCCGTTCGGTTGTTGGAAGTGATGTTAGCGGTGAAGGGAGCTTATGCTTCTCTGATGCTGATGATGGTTCTTGCTACTCCCGTTTCTACTCAACAAATGGTGGTTCATATGATGATTACAGCTTTGCTTGTGTTTCTGATCCTGAGGCTGGGGGTGTTTCTCATTCTGGGAGAGCTTCTTCTGTTTCTGAGTGCTCTGTGGAGGTGGAAACTAGAACTGGGGTTCCTGAGATCAAAGTGCATTTGGCTAGAGTGGAGAAGGATTGTAGGATTTGTCACATGGGTTTGGAGAGTGATAGCCATGAGTCTGGTGCCCCCATAGAATTGGGTTGTTCCTGTAAGGATGATTTGGCTGCTGCTCACAAGCACTGTGCTGAGGCCTGGTTCAAGATTAAGGGAAATAGGACTTGTGAAATTTGTCATTCTGTTGCTCGGAATGTTTATGGAACAAACGAGGATTCGACAGAGCATGTTAGTGACGGCAACAATGCTACTACAGCAGCAGCCACACTCTCCACACCTGCTCCTTCTACAGAACCTCGAAGATTTTGGCACGGCCATCGCTTCCTCAATTTCTTGCTTGCTTGCATGGTTTTTGCATTTGTGATATCATGGCTTTTCCACTTTAATGTGCCATCATCGTAG | 693 | 0.4661 | MDTLQMSRVDLEQGNHRRSVVGSDVSGEGSLCFSDADDGSCYSRFYSTNGGSYDDYSFACVSDPEAGGVSHSGRASSVSECSVEVETRTGVPEIKVHLARVEKDCRICHMGLESDSHESGAPIELGCSCKDDLAAAHKHCAEAWFKIKGNRTCEICHSVARNVYGTNEDSTEHVSDGNNATTAAATLSTPAPSTEPRRFWHGHRFLNFLLACMVFAFVISWLFHFNVPSS* | 231 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu8g1160 | 230 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 97 | 163 | IPR011016 | GO:0008270 | |
Pvu8g1160 | 230 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 94 | 166 | IPR013083 | - | |
Pvu8g1160 | 230 | SMART | ringv_2 | 104 | 157 | IPR011016 | GO:0008270 | |
Pvu8g1160 | 230 | SUPERFAMILY | RING/U-box | 102 | 160 | - | - | |
Pvu8g1160 | 230 | CDD | RING_CH-C4HC3_MARCH | 105 | 157 | - | - | |
Pvu8g1160 | 230 | PANTHER | OS01G0850200 PROTEIN | 6 | 229 | - | - | |
Pvu8g1160 | 230 | PANTHER | ZINC FINGER, RING-CH-TYPE | 6 | 229 | - | - | |
Pvu8g1160 | 230 | Pfam | RING-variant domain | 105 | 156 | IPR011016 | GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu8g1160 | Pvu-Chr8 | 13342605 | 13345724 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu8g1160 | 69 | 230 | C3H Transcription Factor Family | AT5G05830 | 61.350 | 3.48e-67 | 204 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu8g1160 | - | - | gmx:100808666 | 419.083 |