Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1147 ATGTTACAGAGTGTATCTAACATAAATACATGCCACAGAAAGCAAACACACCAAGAATCTAAGCCACCCACCCTACTAATAAAACCCTTCAAGTCCAAACCTTTTAGCCAAAACCAAACACCCTTTTGGCCACTCTTCACAATGCCAACCCAACCTGACTCACCCAAGACGTTGACCCAAATGTTTCAGAACATCTTCTCAGACAACAGTAACATTATGCTTGCAGCCATCAATTCCCTTCTCCTTGTCATCCTTTTTGTCCTCCTTCTCCACCTCGCCAAATGGTTCCTTGCTCAAGCACAGGCTCAGGCACACGCCCGCCGTCGGCGCCGCCGCCGACGAACGACGGTGACCGTCTCCGACGTCCTTGGCCCGGCAAGGTTCCACCACTTCCACGGGTTCAACATAGAAGACTCCTCACCCCTCTCAACCAAAGGCCTTGATTCTTCCACCATCAGAGCAATTCCTCTCTTCATCTATGAGCATAACAAGGCCAAAGAAGATGAAGAACTTGATTGGGTGATTTGTTTGAGTGCCTTTGAGGGTGGTGAAGTGGGAAGGTGTTTGCCAAAGTGTGGCCATGGTTTTCATGTGGAGTGCATTGACATGTGGTTGAGTTCACACTCCAATTGTCCTATTTGTAGAGCCATTGTAGTAAATGTTGTTGAGAGTGATTCTTCTCAGGTTGTGTCTTCAAGAGATCATGGTGATGAATATGGTGGTTCTGATTTTGAGATTGTGGTTGATGCTGGTTCTGATGAGAGTAGAGAGAGTGAGAACGGGAGTGGTAATGGTAATGGTAATGGCAGCGGAGGATCAAGAACAAGTGTTTCATTAAGAGCATGTTTGGAACACTGA 858 0.4674 MLQSVSNINTCHRKQTHQESKPPTLLIKPFKSKPFSQNQTPFWPLFTMPTQPDSPKTLTQMFQNIFSDNSNIMLAAINSLLLVILFVLLLHLAKWFLAQAQAQAHARRRRRRRRTTVTVSDVLGPARFHHFHGFNIEDSSPLSTKGLDSSTIRAIPLFIYEHNKAKEDEELDWVICLSAFEGGEVGRCLPKCGHGFHVECIDMWLSSHSNCPICRAIVVNVVESDSSQVVSSRDHGDEYGGSDFEIVVDAGSDESRESENGSGNGNGNGSGGSRTSVSLRACLEH* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1147 285 MobiDBLite consensus disorder prediction 1 24 - -
Pvu8g1147 285 PANTHER - 48 277 - -
Pvu8g1147 285 MobiDBLite consensus disorder prediction 230 285 - -
Pvu8g1147 285 SUPERFAMILY RING/U-box 172 221 - -
Pvu8g1147 285 SMART ring_2 174 214 IPR001841 -
Pvu8g1147 285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 219 IPR013083 -
Pvu8g1147 285 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 48 277 IPR044675 -
Pvu8g1147 285 CDD RING-H2_EL5_like 175 215 - -
Pvu8g1147 285 Pfam Ring finger domain 175 215 IPR001841 -
Pvu8g1147 285 MobiDBLite consensus disorder prediction 257 277 - -
Pvu8g1147 285 ProSiteProfiles Zinc finger RING-type profile. 175 215 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1147 Pvu-Chr8 13025477 13027037 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1147 66 280 Rapid Response to Elicitors AT3G16720 33.333 2.78e-27 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1147 - - pvu:PHAVU_006G070000g 403.675