Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1123 ATGCTTCAGATTCGGCTTAGTAGGGCTCCTGCATCAGAGGGGTCAGCAGGGGTGAAACAGTCACTTCTTGAAAATGTTACAGTTGCCTGCCCTGACCATCTGGTTCTTGCTGATCTTCCTGTTGCAAAGGGCATCGGTGCAGCCACGGCTACTTCTCTTGTGAAGACTTTGGGCCGTAGGTCCCGCCGCCAGCTTGGCGAGCGAGTCCATTTCTGTGTTCGCTGCGATTTCCCTGTCGCTATTTATGGACGCCTGAGCCCTTGTGAACATGCCTTTTGTCTGGATTGTTCTAGAAGTGATTCAATGTGCTACCTGTGTGATGAAAGAATCCAGAAGATTCAAACAATCAAAATGATGGAAGGAATCCTCATTTGTGCTGCTCCTCATTGTCTCAAATCTTTCTTAAAGAAAGCTGATTTTGAATCTCATATCCAAGACAGCCATGCCAACCTTCTGCGACCCAATGCTGATAAAGAAGATGGAAATGAGTCAGAGGCACAGAGTGTTAGGCAATCTACAGCTTCAGATTCCACTGCTAGAGGTCCCCAAAGACCAGTTTTTTCTCCTGGTTCAAATTCCCAGCAACATGATCTGGAAGAAAAATCTCGTAGACAGACACCTAGAGAGCAACCTTCTAGGCAAACCATGCAGCCAAAGCCACCATATTACGGTCAACACCCTTCAGATACCATGTCTGGCTCTGTTGGAGGCGGACAACAGGGCTTTCATCAACAAAGTTTTGACATGCAACAACCCCCACAAGAACCTTCCCAGTTTTCTGACAGGCAACAAGCAGTGGGTCCAGAGACCCCATTTCCTGAGTATCCAACGATGCACCCTGCTCAACCTTCCAATGTTCCCTCCCTGGTTACTTCAAACCCAATGCTGAACCCTCCTTTGCCATTTGGTTATCCCCCTTACCCAAACGAACGAGCTCAACCATTTTATACTGCTCCGTATGATATGCCTAGGCAGGACTCGGGTGCTGATATAGGTGGGGACCAGAGTTCATTGTTGGGTTTCCCACAAGGTGCCCCAAATGGCCCAAACTTTCCAGGAAATTATCCCCAGCCCTGGAATTCAGGAATTGGTGGTGTGCCTTTTGAACAAGCACAGGGTGGTATGGTTGTGGATCCAAGGGAGGGCAAAGGTATATTGGCACCGCAGCCCATGCCCCTCCCACCACCACCTCCGCCTCCACCCAACATGTCTCATTTGAAACAGAACTACTATTCTGGAGAGCTTGGACATGATGGTCAGGGTTATGGGTGGCAGCATGATAACCGTGATAGCTTTGGTAGCCATGGCTAG 1311 0.4897 MLQIRLSRAPASEGSAGVKQSLLENVTVACPDHLVLADLPVAKGIGAATATSLVKTLGRRSRRQLGERVHFCVRCDFPVAIYGRLSPCEHAFCLDCSRSDSMCYLCDERIQKIQTIKMMEGILICAAPHCLKSFLKKADFESHIQDSHANLLRPNADKEDGNESEAQSVRQSTASDSTARGPQRPVFSPGSNSQQHDLEEKSRRQTPREQPSRQTMQPKPPYYGQHPSDTMSGSVGGGQQGFHQQSFDMQQPPQEPSQFSDRQQAVGPETPFPEYPTMHPAQPSNVPSLVTSNPMLNPPLPFGYPPYPNERAQPFYTAPYDMPRQDSGADIGGDQSSLLGFPQGAPNGPNFPGNYPQPWNSGIGGVPFEQAQGGMVVDPREGKGILAPQPMPLPPPPPPPPNMSHLKQNYYSGELGHDGQGYGWQHDNRDSFGSHG* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1123 436 MobiDBLite consensus disorder prediction 313 436 - -
Pvu8g1123 436 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI 1 409 - -
Pvu8g1123 436 MobiDBLite consensus disorder prediction 388 404 - -
Pvu8g1123 436 ProSitePatterns Zinc finger C2H2 type domain signature. 125 148 IPR013087 -
Pvu8g1123 436 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HAKAI-RELATED 1 409 IPR040383 GO:0016567|GO:0061630
Pvu8g1123 436 MobiDBLite consensus disorder prediction 209 265 - -
Pvu8g1123 436 MobiDBLite consensus disorder prediction 153 292 - -
Pvu8g1123 436 MobiDBLite consensus disorder prediction 166 195 - -
Pvu8g1123 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 120 IPR013083 -
Pvu8g1123 436 CDD RING-HC_HAKAI_like 70 106 IPR040380 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1123 1 433 C2H2 Transcription Factor Family AT5G01160 45.982 1.38e-110 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1123 K15685 - gmx:100817582 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1123 8 12651531 12656683 Pvu8g1123 8 12651531 12656683 ECH