Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1104 ATGCATAGGGCAATTGAAGCACTGTCTCCAGCCTCCTATCTCCAAAATTCAAACTGGTTGTTCCAGGAAAGCAAGGGAGGAGGATGGACTGCAGAAGAGAACAAGCTGTTTGAGAATGCTTTGGCTTACTATGATAAGGATACCCCAGATAGATGGATGAGGGTGGCAGCCATGATTCCAGGGAAAACTGTTGGTGATGTGATCCAACAGTACAGAGAGCTTGAGGAAGATGTGAGTGTCATTGAAGCAGGTTTGATTCCAGTTCCTGGCTATACTACCAGTTCTTTCACATTGGAGTGGGTTAACAGTCAAAGCTATGACGAATTCAAGCAGTTTTGTAGTGTTGGAGGGAAAAGGGGTGCGTCCACTAGGCCATCTGAGCAGGAAAGGAAGAAAGGAGTGCCATGGACTGAAGAAGAGCACAGGCAATTTCTGCTGGGTCTGAAGAAGTATGGTAAAGGGGATTGGAGAAACATCTCTAGGAACTTTGTGACCACAAGGACACCTACCCAGGTTGCAAGTCATGCTCAGAAATACTTCCTCAGGCAGCTTACAGGAGGGAAGGACAAGAGGAGATCCAGTATCCATGACATCACAATGGTCAATCTCCAAGAAACAAAATCTCCTTCATCAGACACTACCAGGCCTTCTTCACCACTACAGAATCAGAAACTGTGTAGCATGGTTAAGCAGGAATATGATTGGAAATTGCCATGTAATGACATGCCTTTTGTTTTCAATTCAACAAATGGAAATATGTTCATGGCAGCACCACTGCATGGGATTTCTTCATATGAATCTAGACCACAGGAGCTTAATATACTTAGACAATCTCCATGGATGCCAGTTTTCACCTTGTGA 861 0.4448 MHRAIEALSPASYLQNSNWLFQESKGGGWTAEENKLFENALAYYDKDTPDRWMRVAAMIPGKTVGDVIQQYRELEEDVSVIEAGLIPVPGYTTSSFTLEWVNSQSYDEFKQFCSVGGKRGASTRPSEQERKKGVPWTEEEHRQFLLGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFLRQLTGGKDKRRSSIHDITMVNLQETKSPSSDTTRPSSPLQNQKLCSMVKQEYDWKLPCNDMPFVFNSTNGNMFMAAPLHGISSYESRPQELNILRQSPWMPVFTL* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1104 286 MobiDBLite consensus disorder prediction 117 136 - -
Pvu8g1104 286 SUPERFAMILY Homeodomain-like 27 82 IPR009057 -
Pvu8g1104 286 ProSiteProfiles Myb-like domain profile. 21 75 IPR001005 -
Pvu8g1104 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 184 IPR017930 -
Pvu8g1104 286 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 7 254 IPR043363 -
Pvu8g1104 286 PANTHER TRANSCRIPTION FACTOR DIVARICATA 7 254 - -
Pvu8g1104 286 Gene3D - 134 184 - -
Pvu8g1104 286 SMART sant 132 182 IPR001005 -
Pvu8g1104 286 SMART sant 25 77 IPR001005 -
Pvu8g1104 286 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 131 183 IPR006447 GO:0003677
Pvu8g1104 286 CDD SANT 135 180 IPR001005 -
Pvu8g1104 286 Gene3D - 21 88 - -
Pvu8g1104 286 ProSiteProfiles SANT domain profile. 136 184 IPR017884 -
Pvu8g1104 286 ProSiteProfiles Myb-like domain profile. 128 180 IPR001005 -
Pvu8g1104 286 SUPERFAMILY Homeodomain-like 129 183 IPR009057 -
Pvu8g1104 286 CDD SANT 29 74 IPR001005 -
Pvu8g1104 286 Pfam Myb-like DNA-binding domain 135 180 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1104 Pvu-Chr8 12313062 12315285 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu8g1104 Myb_DNA-binding 3.7e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1104 - - var:108329798 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1104 8 12313062 12315285 Pvu8g1104 8 12313062 12315285 ECH
Pvu8g1104 8 12313062 12315285 Pvu1g2485 1 50018716 50021153 ECH
Pvu8g1104 8 12313062 12315285 Pvu8g2344 8 54023111 54025282 ECH
Pvu1g2485 1 50018716 50021153 Pvu8g1104 8 12313062 12315285 ECH