Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1100 ATGAAGCTCTTATCATTATGGTTGCTTCTAGTTGTAATGGTCAGTTCTCTCCATGCAACATTGTCTTCCTCACTCTCACTTCAACACACAAAAGCAAATGCTCTTTTGAAGTGGAAAGCAAGCCTTGACATCCGAAGTCAAACATTACTATCTACATGGGATGGATCAATCTCCAACATAAATCTTACAAACATTGGAGTAAGTGGTACGCTTCAAACTCTCTATTTTTCATCTCTTCCAAACATCTTCAATCTAGATACTAGTCTTAACTCCTTGAGTAGAACTAATCTCACAAGGACAATTCCAAATTCTATTGGAAAGCTATCATTCTTGTCAATACTTCTTTTATGGAATTGCAGTCTCACAGGATCTATTCCAAAATCTATTGGAAATTTGATCAGTCTATTAAGTGTAGAGTTTTCATTCAACAAACTTTACGGACATATTCCTCACAAAATTGGGAATTTGTCATACTTAAAGTTTTTTAGGCTTGGAGTTAATTACTTATATGGTTGTATTCCTCAAAATATGAAAAATTTGTTTCAACTTAATTTGTCCCTTAACTCTTTATCACAAATGAATGGACTAAACAACCTTGAATATTTGCAATTATATGAAAATAACTTCATTGGTCATTTGCCTCACAACATTTGCGTTAGTGGAAAATTGATAGATTTTAGTGTTAGCAATAACTATTTCACAGGTCTAGTACCCAATAGTTTGAAGAATTGCTCTAGTCTCATAAAAGTTTTGCTTGAGCAAAATCATTTAACAGGAAATATAATAGAGGATTTGAGTCATTCCACTGGAACTAAGTCAGGAAAGCAATTTACATATATTCCTGAAGAGTTAGGTAATTTGATATACTTGATTGAACTCTCTATATATATTAATAATCTTTCAGAAAATGTTACTATACAAATAACATCATTGCAAAGACTTGACACCTTAAAGCTCAAAGCAAATAATCTTTTTGGCCAAATAAACTTGATGATAAGCTTGACATTTGTTGATATATCATACAACCAATTAGAGGGTCCACTTCCAAACATTTTAGCCTTTAATACGACTACCATTGAAGCATTGAAAGATAATAAAGGTTTTTGTGGTAATGTCTCAGGCTTGGAACCATGCCCAACGTCACGTGACAAATCTCAAAGTCATAAGACTAACAGAGTCATATTGGTACTTTTACCCATTAGTTTGAGCATTTGCATGCTAGCATTATTTGTCTTTGGAGTCTCATATCATCTTTATAAAAGTTTTGATGGAAAGATGGTGTATGAGAACATAATTGAAGCCACAAAAGAGTTTGACAATAAACATCTCATTGGAGTTGGAGGACAAGGAAGTGTTTACAAAGCTGAATTGCAAACAAATCAAATTGTTGTTTTTAAGAAATTCCATTCCATACAAAATGGAGAAATATCCAATGTTAAAGCTTTCAAAAGTGAAATTCAAGCTTTGACGGAGATTCGATATGGATTTTGTTCTCATTCCCGATTCTCATTTTTGGTATATGAGTTTTTGGAAAAGGGGAGCACAAATAAGATTTTAAAAGACGATGAACAAGATATTGCATTTAATTGGAATAAGAGGTTTGATGCCATTAAAGGTGTATCAAATGCTTTATTCTATATACATCATGATTGTTCACCTCCAATTGTTCATCGAGATATATCAAGCAAGAATGTTCTTTTGAATTTGGAGTATGTGGCTCATGTCTCAGATTTTGGAACAATCAATCTTCTTAATCCTAATTCAACCATTTGGACCTCATTTGTAGGAATTTTTGGATATGCTTCTCCAGAGTTTACATACACAATGGAAGTGAATGAAAAATGTCATGTATACAACTTTGGGGTATTGGCACTAGAAATACTTTTTGGAAAACACCTTAAAGATTTTATAAATTCATTTTTGACATCTTCATCAAAATTAGATAAACATCTCTCATATCCTGTAAATATTACTAAGGAGATAGCTTTGATTGTAAGGATAGCAAATGTTTGCTTGACTAAAAGTCCTAGTTTTTGTCTACCATAG 2046 0.3245 MKLLSLWLLLVVMVSSLHATLSSSLSLQHTKANALLKWKASLDIRSQTLLSTWDGSISNINLTNIGVSGTLQTLYFSSLPNIFNLDTSLNSLSRTNLTRTIPNSIGKLSFLSILLLWNCSLTGSIPKSIGNLISLLSVEFSFNKLYGHIPHKIGNLSYLKFFRLGVNYLYGCIPQNMKNLFQLNLSLNSLSQMNGLNNLEYLQLYENNFIGHLPHNICVSGKLIDFSVSNNYFTGLVPNSLKNCSSLIKVLLEQNHLTGNIIEDLSHSTGTKSGKQFTYIPEELGNLIYLIELSIYINNLSENVTIQITSLQRLDTLKLKANNLFGQINLMISLTFVDISYNQLEGPLPNILAFNTTTIEALKDNKGFCGNVSGLEPCPTSRDKSQSHKTNRVILVLLPISLSICMLALFVFGVSYHLYKSFDGKMVYENIIEATKEFDNKHLIGVGGQGSVYKAELQTNQIVVFKKFHSIQNGEISNVKAFKSEIQALTEIRYGFCSHSRFSFLVYEFLEKGSTNKILKDDEQDIAFNWNKRFDAIKGVSNALFYIHHDCSPPIVHRDISSKNVLLNLEYVAHVSDFGTINLLNPNSTIWTSFVGIFGYASPEFTYTMEVNEKCHVYNFGVLALEILFGKHLKDFINSFLTSSSKLDKHLSYPVNITKEIALIVRIANVCLTKSPSFCLP* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1100 681 ProSiteProfiles Protein kinase domain profile. 438 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g1100 681 Gene3D Phosphorylase Kinase; domain 1 414 509 - -
Pvu8g1100 681 ProSiteProfiles Leucine-rich repeat profile. 179 200 IPR001611 GO:0005515
Pvu8g1100 681 Gene3D Ribonuclease Inhibitor 178 266 IPR032675 -
Pvu8g1100 681 Pfam Protein kinase domain 439 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g1100 681 SUPERFAMILY Protein kinase-like (PK-like) 424 677 IPR011009 -
Pvu8g1100 681 ProSitePatterns Tyrosine protein kinases specific active-site signature. 555 567 IPR008266 GO:0004672|GO:0006468
Pvu8g1100 681 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 92 265 - -
Pvu8g1100 681 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 279 677 - -
Pvu8g1100 681 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 4 95 - -
Pvu8g1100 681 SUPERFAMILY RNI-like 59 355 - -
Pvu8g1100 681 Gene3D Transferase(Phosphotransferase) domain 1 510 678 - -
Pvu8g1100 681 Gene3D Ribonuclease Inhibitor 28 177 IPR032675 -
Pvu8g1100 681 Gene3D Ribonuclease Inhibitor 268 379 IPR032675 -
Pvu8g1100 681 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 279 677 - -
Pvu8g1100 681 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 92 265 - -
Pvu8g1100 681 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 4 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1100 Pvu-Chr8 12196990 12201859 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1100 92 603 Receptor kinase-like Gene Family AT4G08850 35.843 4.23e-100 327
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Pvu8g1100 Pkinase 1.2e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1100 - - pvu:PHAVU_008G106600g 1296.18