Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1089 ATGATCTTAATCAAGGAATCAGCAATTGCAGCAACTCCTGCAGGAAATGAAACTGATTTGCAAGCCTTACTTGACTTCAAGAGTAGGATAGTAGAAGATCCATTCAAAATTATGAGCTCTTGGAATGACTCCATCCATCACTGCAGTTGGATAGGAATCACATGCAACATCTCCAATGGAAGGATCATGGACCTTAGCCTTGAGCAACTGAGACTAGGAGGCACTCTTACACCATTCATAGGAAACCTCACATTCCTCAACAGACTCAACTTGTTAAACAATAGCTTCCATGGTGAATTTCCTCATGAGGTGGGTCGTTTACTCTACCTACAACATCTAAACTTCAGCTATAATAACTTTGGTGGGAGTATTCCAAGTAATCTCAGTCACTGCATAAAACTGAAAGTACTAGCTGCAGGAGCTAACAATCTTACAGGAACAATCCCAACTTGGATTGGAAACCTTTCTTCTTTGTCTCGAATTAGCTTTGGGTTAAACAACTTCATTGGAAGCATACCACACGAGATAGGCCTTTTATCAAGCTTGACTTATCTTGTGCTATATGGGAATTACTTGTCTGGCTCGGTTCCTTCTTCAATCTATAACAAATCTTCATTATACTATTTCAGTTTTACTCAAAACCATCTTCATGGGAACTTACCAGCTGATGTTGGAATTACTCTTCCTAACATTCAAGTATTTGCCGGTGCGGTCAACAATCTCACAGGATCTGTCCCTGCATCATTTTTGAATGCATCAAAACTAGAGATTCTTGATTTCTCCTTGAATGGTCTCACTGGAGCACTGCCAAAGAACTTAGGGGTCTTAAACAGGTTAACTAGACTTAGCTTTGAACACAACAGACTGGGAACTGGGAAAACAGATGATGTTGCCTTTCTTGATTCTTTGGTCAACTGCACAGTTCTACAAGTTTTACGTCTAGGAGTAAATAATTTTGGTGGAGTATTGCCTAAAGCAATTGCTAATTTCTCAAGCCAAATGCACACATTTGCCCTTAATTCCAATGGAATACATGGAAATATACCTGCTGGAATTGGCAATCTTGCTAACCTGGCCCTAATAGCTTTGGAAGGAAACCGTCTAACTGGTAGTCTTCCTGATGCGTTGGGTAGGCTGAAAAATCTAAGAGAATTGTATCTGAATGTCAACAAATTTTCAGGTAGAATCCCATCCTCCTTGGGAAATTTGTCTGTATTAATAAAACTCTTTCTGGAGGAGAACAACTTTGAGGGAAGCATCCCTTCTAGTCTTGGAAACTGCCAAAATTTATTGGTACTCAGCCTTTATAGCAACAAGCTCAGTGGTACCATACCAGTTGAAGTTATTGGCCTTTCTTCACTAGCAATATATTTAGATGTATCTCATAATGCTTTGTCAGGGACTCTTCCAGCTGAAGTGAGTAAGCTACATAACCTTGGAGAGTTGGTGCTGTCTGAGAACAACTTTTCTGGAGTCATTCCATCTTCTCTTGGCAGTTGCATTAGCTTGGAAAAGCTGCATTTGGAGGGAAATTCTTTTGATGGAAACATCCCTCAAACTTTAAAGAATTTGAGAGGTTTACTTGACATAGATCTTTCACGAAATAACTTGTCTGGTAAGATTCCTGAGTTTCTTGGAGAGTTCACTGAGCTCAAACATCTAAATCTTTCATACAATAATTTTGAAGGTGAAATACCAAAGAAAGGAATATTCAAAAATGCTACTTCCCTTTCATTATATGGAAACAACAAGCTATGTGGGGGTGTCCCAGAACTAAATTTCCCTGCATGCACTGTCAGGAAAGCTTCTCTGGCAAGAAGACTTGTTCTTAAGGTGGCTATCCCTATAGCTTGTGCGGTTGTATTACTATTAATTATATCATGTTTTCTTAAACTTCTCCCCACAGTTAAAAGATCAAAAAAGAAAACTCCTACATCAACTACTGAAAGGGATTTGGAATTGAAAATTTCTTACTCAGAAATTACCAAGTGCACTGATGGATTTTCACAGGATAACCTGATTGGTTCGGGAAGTTTTGGTTCTGTATACAAAGGAACTCTATCAGGTGATGAATCTAGTGTTGCAGTTAAAGTATTAAAACTTCAACAGAGAGGAGCATCTAAGAGCTTCATTGATGAATGCCAAGTTCTGAGAAGCATAAGGCATCGCAACCTTCTGAAGATCATAACTGCCATCTCAGGAGTTGATCATCAAGGAAATGACTTCAAAGCTCTAGTGTTTGAGTACATGCCTAAAGGAAGTCTAGAAGATTGGTTGCATCCTATAAGCAATTTGCACTTTCAGAATAAGACATTGACATTCACTGAAAGACTCAACATAGCTATTGATGTTGCTTGTGCACTGGAATATCTCCACCATTTCTGTGAAACTCCAATTGTTCATTGTGACATAAAGCCAAGCAATGTGCTTCTTGACAATGATATGGTTGCCCATGTTGGTGACTTTGGATTAGCTACATTTCTGTTTGAAGAATCAAGCAAGTTATCCACACAACCAGTTATGTCAGCTAGCCTAAGGGGTTCTATTGGCTACATCCCTCCAGAGTATGGTATGGGTGGGAAGCCTTCTACACTTGGAGATATATACAGCTATGGGATACTGTTACTGGAGATTTTCACAGGAAAAAGACCTACAGATGAAGCATTTGAAGGTGGCACGGGAATTCAGCAGTTTGTAGCAATGGCTCTACCTAACAATGTCATGGATATAGCTGATCCTTCATTAGTCTCTGAGCAAGACTTTGATGGGGGAAGTGAAGAATTTGAGTGTGAAACGAAAGCTATAAGGAGGAACAATGAGATTGAAGCCACAGCTAAAGGTTTGATTGAGGATTGCTTTGTGTCTCTGATGCAAATTGGAATGTCTTGCTCTGCAAATCCACCTAGTGAACGAATGCCAATCACTGTGGTCATCAACAAACTACACACTATCAAGAACATTTATACAGATAAAGCATAG 2979 0.3938 MILIKESAIAATPAGNETDLQALLDFKSRIVEDPFKIMSSWNDSIHHCSWIGITCNISNGRIMDLSLEQLRLGGTLTPFIGNLTFLNRLNLLNNSFHGEFPHEVGRLLYLQHLNFSYNNFGGSIPSNLSHCIKLKVLAAGANNLTGTIPTWIGNLSSLSRISFGLNNFIGSIPHEIGLLSSLTYLVLYGNYLSGSVPSSIYNKSSLYYFSFTQNHLHGNLPADVGITLPNIQVFAGAVNNLTGSVPASFLNASKLEILDFSLNGLTGALPKNLGVLNRLTRLSFEHNRLGTGKTDDVAFLDSLVNCTVLQVLRLGVNNFGGVLPKAIANFSSQMHTFALNSNGIHGNIPAGIGNLANLALIALEGNRLTGSLPDALGRLKNLRELYLNVNKFSGRIPSSLGNLSVLIKLFLEENNFEGSIPSSLGNCQNLLVLSLYSNKLSGTIPVEVIGLSSLAIYLDVSHNALSGTLPAEVSKLHNLGELVLSENNFSGVIPSSLGSCISLEKLHLEGNSFDGNIPQTLKNLRGLLDIDLSRNNLSGKIPEFLGEFTELKHLNLSYNNFEGEIPKKGIFKNATSLSLYGNNKLCGGVPELNFPACTVRKASLARRLVLKVAIPIACAVVLLLIISCFLKLLPTVKRSKKKTPTSTTERDLELKISYSEITKCTDGFSQDNLIGSGSFGSVYKGTLSGDESSVAVKVLKLQQRGASKSFIDECQVLRSIRHRNLLKIITAISGVDHQGNDFKALVFEYMPKGSLEDWLHPISNLHFQNKTLTFTERLNIAIDVACALEYLHHFCETPIVHCDIKPSNVLLDNDMVAHVGDFGLATFLFEESSKLSTQPVMSASLRGSIGYIPPEYGMGGKPSTLGDIYSYGILLLEIFTGKRPTDEAFEGGTGIQQFVAMALPNNVMDIADPSLVSEQDFDGGSEEFECETKAIRRNNEIEATAKGLIEDCFVSLMQIGMSCSANPPSERMPITVVINKLHTIKNIYTDKA* 993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1089 992 Gene3D Phosphorylase Kinase; domain 1 648 749 - -
Pvu8g1089 992 Pfam Leucine Rich Repeat 110 131 IPR001611 GO:0005515
Pvu8g1089 992 Pfam Leucine Rich Repeat 381 403 IPR001611 GO:0005515
Pvu8g1089 992 ProSitePatterns Protein kinases ATP-binding region signature. 674 697 IPR017441 GO:0005524
Pvu8g1089 992 SMART serkin_6 668 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g1089 992 Gene3D Ribonuclease Inhibitor 18 130 IPR032675 -
Pvu8g1089 992 Gene3D Ribonuclease Inhibitor 226 297 IPR032675 -
Pvu8g1089 992 SMART LRR_typ_2 179 203 IPR003591 -
Pvu8g1089 992 SMART LRR_typ_2 379 403 IPR003591 -
Pvu8g1089 992 SMART LRR_typ_2 355 378 IPR003591 -
Pvu8g1089 992 SMART LRR_typ_2 548 573 IPR003591 -
Pvu8g1089 992 SMART LRR_typ_2 476 500 IPR003591 -
Pvu8g1089 992 SMART LRR_typ_2 107 131 IPR003591 -
Pvu8g1089 992 ProSiteProfiles Protein kinase domain profile. 668 985 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g1089 992 SUPERFAMILY Protein kinase-like (PK-like) 642 981 IPR011009 -
Pvu8g1089 992 Gene3D Ribonuclease Inhibitor 131 225 IPR032675 -
Pvu8g1089 992 Gene3D Transferase(Phosphotransferase) domain 1 750 991 - -
Pvu8g1089 992 Pfam Leucine rich repeat 502 561 IPR001611 GO:0005515
Pvu8g1089 992 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE, PUTATIVE-RELATED 13 986 - -
Pvu8g1089 992 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 13 986 - -
Pvu8g1089 992 SUPERFAMILY L domain-like 16 289 - -
Pvu8g1089 992 Gene3D Ribonuclease Inhibitor 298 597 IPR032675 -
Pvu8g1089 992 Pfam Leucine rich repeat N-terminal domain 17 56 IPR013210 -
Pvu8g1089 992 SUPERFAMILY L domain-like 335 587 - -
Pvu8g1089 992 Pfam Protein kinase domain 669 952 IPR000719 GO:0004672|GO:0005524|GO:0006468
Pvu8g1089 992 ProSitePatterns Serine/Threonine protein kinases active-site signature. 799 811 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1089 Pvu-Chr8 12071200 12074319 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1089 16 988 Receptor kinase-like Gene Family AT3G47570 43.439 0.0 796
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Pvu8g1089 Pkinase 2.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1089 - - gmx:106794146 1660.97