Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1082 TCCCCAACGAATCACAAGGAGACACACATAAAAAGAATAGCTGCATTGCCTGGTGAATGGTATGGCACTCATGATAAAAGCGATGTGATTCAGATTCCATCAGGACATTGTTGGGTTGAGGGAGACAACTCAGCCTCTAGCATTGATTCAAAGTCATTTGGACCAATTCCCTTAGGCCTAATTCGGGGAAGGGCTACCCATGTTGTGTGGCCTCCTCAAAGAATAGGAGCTGTCAAGACTACTCCACCACCACAAGGATTATGTTCTGCATTGGAATAA 279 0.4516 SPTNHKETHIKRIAALPGEWYGTHDKSDVIQIPSGHCWVEGDNSASSIDSKSFGPIPLGLIRGRATHVVWPPQRIGAVKTTPPPQGLCSALE* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1082 92 Pfam Signal peptidase, peptidase S26 28 70 IPR019533 GO:0004252|GO:0006465
Pvu8g1082 92 Gene3D Umud Fragment, subunit A 1 81 - -
Pvu8g1082 92 PANTHER MITOCHONDRIAL INNER MEMBRANE PROTEASE SUBUNIT 2 1 84 IPR037730 GO:0006465|GO:0006627|GO:0008236|GO:0042720
Pvu8g1082 92 CDD S26_SPase_I 1 65 IPR019533 GO:0004252|GO:0006465
Pvu8g1082 92 SUPERFAMILY LexA/Signal peptidase 2 78 IPR036286 -
Pvu8g1082 92 PRINTS Bacterial leader peptidase 1 (S26A) family signature 9 21 IPR000223 GO:0006508|GO:0008236|GO:0016020
Pvu8g1082 92 PRINTS Bacterial leader peptidase 1 (S26A) family signature 32 51 IPR000223 GO:0006508|GO:0008236|GO:0016020
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1082 1 82 MADS-box Gene Family AT1G29960 39.773 2.04e-15 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1082 K09648 - gmx:100499932 159.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1082 8 11981979 11983104 Pvu8g1082 8 11981979 11983104 ECH