Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu8g1080 | ATGGGGTTTGGTGTGAAAAGGAGGAAGAAGAGAGGAGAAGCAGAGGGAGCGGGAGAAGGAAGGATGCGCAAGTCTTTCAAGGATTCACTCAAGGCTCTTGAAGCTGACATCCAGTTTGCCAACACACTAGCTTCTGGGTATCCAAGTGGCGGTGCCAGCTTCCAAATGAGATTGTCCTACAGCCCTGCTGCTCAGTTCTTCCTTTTCCTGGTTCAGTGGACTGACTGTCATCTTGCTGGAGCCTTAGGATTGCTCAGAATTCTAATATACAAGGCATATGAAGATGGGAAGACAACCATATCCATTTACGAAAGAAAAGCCAGTCTAAAGGAGTTCTATGGTATGGTATTTCCCTCTTTATTGCAACTTCACAGAGGAATCACTGAAGTTGAAGACCGAAAACAAAAACATCTATGTGCTACTAAGTATAAGCTTAAAGATTTGACAAGCAAAGGAAAGCTTTCTGAAATTGACATCGAGAGAGAAGAAGAGTGTGGTATTTGCTTGGAGATGAATAGCATGGTTGTATTGCCCAACTGCTATCATTCAATGTGTATGAAATGCTACCAAGACTGGCACGCAAGATCTCAATCTTGTCCTTTCTGTCGAGACAGTCTCAAAAGAGTAAACTCTGATGATCTTTGGATCTACATTAGCAGCAGTGAGATTAATGACTTGGCTTCAATCAACAAGGAGAATGTGAAAAGATTATTCATATATATAGAAAGTTTGCCTCTAAATGCCAGATCCTATATTCACCATGTCATATCATCACCACTAGTGATTGTCAATTAG | 795 | 0.4138 | MGFGVKRRKKRGEAEGAGEGRMRKSFKDSLKALEADIQFANTLASGYPSGGASFQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKAYEDGKTTISIYERKASLKEFYGMVFPSLLQLHRGITEVEDRKQKHLCATKYKLKDLTSKGKLSEIDIEREEECGICLEMNSMVVLPNCYHSMCMKCYQDWHARSQSCPFCRDSLKRVNSDDLWIYISSSEINDLASINKENVKRLFIYIESLPLNARSYIHHVISSPLVIVN* | 265 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu8g1080 | 264 | ProSitePatterns | Zinc finger RING-type signature. | 180 | 189 | IPR017907 | - | |
Pvu8g1080 | 264 | ProSiteProfiles | Zinc finger RING-type profile. | 165 | 203 | IPR001841 | - | |
Pvu8g1080 | 264 | Pfam | Zinc finger, C3HC4 type (RING finger) | 162 | 208 | - | - | |
Pvu8g1080 | 264 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 150 | 213 | IPR013083 | - | |
Pvu8g1080 | 264 | SMART | ring_2 | 165 | 202 | IPR001841 | - | |
Pvu8g1080 | 264 | PANTHER | ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN | 13 | 263 | - | - | |
Pvu8g1080 | 264 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Pvu8g1080 | 264 | SUPERFAMILY | RING/U-box | 154 | 208 | - | - | |
Pvu8g1080 | 264 | PANTHER | RING FINGER PROTEIN 41, 151 | 13 | 263 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu8g1080 | Pvu-Chr8 | 11970519 | 11973727 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu8g1080 | 164 | 242 | C3H Transcription Factor Family | AT2G20030 | 34.884 | 2.61e-06 | 46.2 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu8g1080 | K25840 | - | gmx:100814293 | 456.062 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pvu8g1080 | 8 | 11970519 | 11973727 | Pvu8g1080 | 8 | 11970519 | 11973727 | ECH | |
Pvu8g1080 | 8 | 11970519 | 11973727 | Pvu10g0022 | 10 | 536750 | 541026 | PCT |