Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1080 ATGGGGTTTGGTGTGAAAAGGAGGAAGAAGAGAGGAGAAGCAGAGGGAGCGGGAGAAGGAAGGATGCGCAAGTCTTTCAAGGATTCACTCAAGGCTCTTGAAGCTGACATCCAGTTTGCCAACACACTAGCTTCTGGGTATCCAAGTGGCGGTGCCAGCTTCCAAATGAGATTGTCCTACAGCCCTGCTGCTCAGTTCTTCCTTTTCCTGGTTCAGTGGACTGACTGTCATCTTGCTGGAGCCTTAGGATTGCTCAGAATTCTAATATACAAGGCATATGAAGATGGGAAGACAACCATATCCATTTACGAAAGAAAAGCCAGTCTAAAGGAGTTCTATGGTATGGTATTTCCCTCTTTATTGCAACTTCACAGAGGAATCACTGAAGTTGAAGACCGAAAACAAAAACATCTATGTGCTACTAAGTATAAGCTTAAAGATTTGACAAGCAAAGGAAAGCTTTCTGAAATTGACATCGAGAGAGAAGAAGAGTGTGGTATTTGCTTGGAGATGAATAGCATGGTTGTATTGCCCAACTGCTATCATTCAATGTGTATGAAATGCTACCAAGACTGGCACGCAAGATCTCAATCTTGTCCTTTCTGTCGAGACAGTCTCAAAAGAGTAAACTCTGATGATCTTTGGATCTACATTAGCAGCAGTGAGATTAATGACTTGGCTTCAATCAACAAGGAGAATGTGAAAAGATTATTCATATATATAGAAAGTTTGCCTCTAAATGCCAGATCCTATATTCACCATGTCATATCATCACCACTAGTGATTGTCAATTAG 795 0.4138 MGFGVKRRKKRGEAEGAGEGRMRKSFKDSLKALEADIQFANTLASGYPSGGASFQMRLSYSPAAQFFLFLVQWTDCHLAGALGLLRILIYKAYEDGKTTISIYERKASLKEFYGMVFPSLLQLHRGITEVEDRKQKHLCATKYKLKDLTSKGKLSEIDIEREEECGICLEMNSMVVLPNCYHSMCMKCYQDWHARSQSCPFCRDSLKRVNSDDLWIYISSSEINDLASINKENVKRLFIYIESLPLNARSYIHHVISSPLVIVN* 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1080 264 ProSitePatterns Zinc finger RING-type signature. 180 189 IPR017907 -
Pvu8g1080 264 ProSiteProfiles Zinc finger RING-type profile. 165 203 IPR001841 -
Pvu8g1080 264 Pfam Zinc finger, C3HC4 type (RING finger) 162 208 - -
Pvu8g1080 264 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 150 213 IPR013083 -
Pvu8g1080 264 SMART ring_2 165 202 IPR001841 -
Pvu8g1080 264 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 13 263 - -
Pvu8g1080 264 MobiDBLite consensus disorder prediction 1 22 - -
Pvu8g1080 264 SUPERFAMILY RING/U-box 154 208 - -
Pvu8g1080 264 PANTHER RING FINGER PROTEIN 41, 151 13 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1080 Pvu-Chr8 11970519 11973727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1080 164 242 C3H Transcription Factor Family AT2G20030 34.884 2.61e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1080 K25840 - gmx:100814293 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1080 8 11970519 11973727 Pvu8g1080 8 11970519 11973727 ECH
Pvu8g1080 8 11970519 11973727 Pvu10g0022 10 536750 541026 PCT