Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1062 ATGCACCCATTAATTCACTCCTCATACTCTCGCACCACTCGTCCTTTTCTCTCTACAATAATGCCGGACCCTCACTCCACCACCGTGCTACCGCCGGAAGAAACTGCGTCCGCCAGCTCTCAGGCGCCGCCGGGCCGGTCACGCGAGGCGGAGCGTGTGCGCGGCACTTCCAGCAGAGGCATCTGGAGTATCGGCGATAGCTCTGTTAGAGACGAAACCTGCTCCTGCTTCGCCGTTGTCTTCAGCTTTTGGTTATTCGTGTCGATGACTATGATACTGGGGGTTTATGGGTCCATGACCATCATGCTTGGTCCAGAATCTTCGATAGTTTTCCAACCTAGTTCGGTATTCGTGAAATCTGTGAAGGTAGAAAATTTGGTGGCAAACCCTGGACCAAGAGCCATTCTTTACGGTACATATGGGGATCCCCCACTTGATGTTGTTAGCTCTTGGGGTGAAACTCTTAATGTGTCTCTTCCCACTGGCGCAGAAAAGGAATGGAAAATTTATCTAAACAGAGGGAGTGTAATAAATATTTCGTATCACGTTAGTTCAAAGAGCTCTTCAGTTTTCCTTATAGTTGCACAAGGGAAGGAGGCCTTCACTCGGTGGCTGGAGAACCCAACAGAACCTAATACAACTCTTTCATGGAATGTGATTCAAGGAAGTGGTATGATTACGCAGGAAATATTCTGGTCGTCCAGCTATTACGTGGCATTGGGTAATTTGGATGAGGACGTGGAGGTGGCATTAAACCTCAGTGTAAGCTCCTCTTTGCATAATACAACAAATGCTTACTACAAATGCGCTCTTACCAGTAGTCCATGCACTTTAGATATTTGCTTTCTTGATGGAAGTGCAGCTGTTTTAGTTACTCCTGGTCCACAACAGAATGCATCCAATGAATGGTATATCAAACTGTCCTATGGACCAAGATGGGTAACCTATATTTTTGGCATTGGTGGATTGACTTTGCTTGTGTTTTGGACCTTCAATTTATTGAACAATCTTCAGTCTGCTCATGTAGATAGAGCAGTAGTTATAACTGGGGGAACAGAACCTCAGAGAGCACCTCTGCTTTCTCACAAAGATGATGATCTTTCAAGTTGGGGTTCGTCATATGATTCCTTGCCACAAGACGAGGAGGATCTTGACTTTCTTCCAGGAGGCCCCATTGATGGGAAGCTTTCAGGTGATGGTGAAACCAGTAACAATACACGGCGTCTATGTGCTATTTGCTTTGATGCTCCAAGGGACTGCTTCTTCCTTCCATGTGGCCACTGCGTGGCTTGTTTTGCATGTGGAACTAGGATAGCTGAGGCATCTGGTACTTGCCCTGTTTGTCGTAGGAACATGAAGAAGGTTAGGAAGATTTTCAATGTTTGA 1386 0.4618 MHPLIHSSYSRTTRPFLSTIMPDPHSTTVLPPEETASASSQAPPGRSREAERVRGTSSRGIWSIGDSSVRDETCSCFAVVFSFWLFVSMTMILGVYGSMTIMLGPESSIVFQPSSVFVKSVKVENLVANPGPRAILYGTYGDPPLDVVSSWGETLNVSLPTGAEKEWKIYLNRGSVINISYHVSSKSSSVFLIVAQGKEAFTRWLENPTEPNTTLSWNVIQGSGMITQEIFWSSSYYVALGNLDEDVEVALNLSVSSSLHNTTNAYYKCALTSSPCTLDICFLDGSAAVLVTPGPQQNASNEWYIKLSYGPRWVTYIFGIGGLTLLVFWTFNLLNNLQSAHVDRAVVITGGTEPQRAPLLSHKDDDLSSWGSSYDSLPQDEEDLDFLPGGPIDGKLSGDGETSNNTRRLCAICFDAPRDCFFLPCGHCVACFACGTRIAEASGTCPVCRRNMKKVRKIFNV* 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1062 461 Pfam Zinc finger, C3HC4 type (RING finger) 407 455 - -
Pvu8g1062 461 PANTHER E3 UBIQUITIN-PROTEIN LIGASE APD1-RELATED 48 461 - -
Pvu8g1062 461 MobiDBLite consensus disorder prediction 15 44 - -
Pvu8g1062 461 MobiDBLite consensus disorder prediction 15 55 - -
Pvu8g1062 461 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 460 IPR013083 -
Pvu8g1062 461 SMART ring_2 410 448 IPR001841 -
Pvu8g1062 461 Pfam Domain of unknown function (DUF4792) 135 201 IPR032008 -
Pvu8g1062 461 ProSiteProfiles Zinc finger RING-type profile. 410 449 IPR001841 -
Pvu8g1062 461 Pfam Domain of unknown function (DUF4793) 225 328 IPR032010 -
Pvu8g1062 461 PANTHER OS05G0521000 PROTEIN 48 461 IPR044586 GO:0004842
Pvu8g1062 461 SUPERFAMILY RING/U-box 409 455 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1062 Pvu-Chr8 11597287 11604362 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1062 383 458 C3H Transcription Factor Family AT3G06140 31.579 2.05e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1062 - - var:108326798 800.431
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1062 8 11597287 11604362 Pvu8g1062 8 11597287 11604362 ECH