Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1061 ATGGGCTTAGACTACTACAAGATCCTTAAAGTAGATAGGAACGCCAAAGATGATGATATTAAGAAAGCATATCGAAGTTTGGCCATGAAGTGGCACCCTGATAAGAACCCCAACAACAAGAAAGACGCTGAAACTAACTTCAAGCAAATCTCGGAAGCATATGATGTCTTGGGTGATCCACAGAAGCGAGCCCTGTATGATCAGTACGGTGAGGAGGCGTTGAATAGTGTGCCGCCGGGTGGCGGTGGTTTTCCGGGTGGCGGTGGTTTTCCTGGTGGCAGCCACGGTGGGTCGACAACATTCCAGTACAATCCCAGAAGTGCTGATGATATATTTTCGGAGTTTTTCGGGTTTAAGAGCCCCGTTGGTCGTGGTGGAACAGGGGACATGGGTGGTCGACCTGGATTTCCCAGGGGTGGCCCGTTTAGTGAAGATATTTTTGCTCAATTTCGGAATGCAGCTGGAGAGGGCTCTGTCCATATGCCTAGGAAAGGGGCACCAATTGAGAGAACATTGCATTGTAGTTTGGAGGATTTGTATAAAGGGACTACCAAGAAAATGAAGATTTCAAGGGATGTTAACGATGCCAGTGGGAGACCCTCCACAGTAGAGGAAATCCTGGCAATTGAGATCAGGCCAGGTTGGAAGAAAGGGACAAAAATAACATTTCCCGAAAAGGGAAATGAACAAAGAGGAGTTATCCCTGCTGATCTTGTATTCATAATCGATGAGAAGCCTCATAGTTTGTTCAAGAGGGATGGCAATGATCTTGTTATCAGCCAGAAAATATCTCTGGTAGAAGCCTTGACAGGTTGCTCAGTTCAGCTGACAACTCTTGATGGTCGGAATCTGACAATCCCTATCAACAACACAGTTAGTCCTACATACGAAGAAGTTGTGAAAGGAGAGGGCATGCCAATTCCCAAAGAGCCTTCCAAGAAAGGGAACTTGAGAATCAAGTTCAATATCAAGTTTCCCTCCAGGCTTACCTCAGAACAGAAAAGTGGCATCAAACGATTATTGACTTCTCCTTAA 1035 0.458 MGLDYYKILKVDRNAKDDDIKKAYRSLAMKWHPDKNPNNKKDAETNFKQISEAYDVLGDPQKRALYDQYGEEALNSVPPGGGGFPGGGGFPGGSHGGSTTFQYNPRSADDIFSEFFGFKSPVGRGGTGDMGGRPGFPRGGPFSEDIFAQFRNAAGEGSVHMPRKGAPIERTLHCSLEDLYKGTTKKMKISRDVNDASGRPSTVEEILAIEIRPGWKKGTKITFPEKGNEQRGVIPADLVFIIDEKPHSLFKRDGNDLVISQKISLVEALTGCSVQLTTLDGRNLTIPINNTVSPTYEEVVKGEGMPIPKEPSKKGNLRIKFNIKFPSRLTSEQKSGIKRLLTSP* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1061 344 CDD DnaJ_C 166 329 - -
Pvu8g1061 344 PRINTS DnaJ domain signature 6 24 IPR001623 -
Pvu8g1061 344 PRINTS DnaJ domain signature 24 39 IPR001623 -
Pvu8g1061 344 PRINTS DnaJ domain signature 42 62 IPR001623 -
Pvu8g1061 344 PRINTS DnaJ domain signature 62 81 IPR001623 -
Pvu8g1061 344 CDD DnaJ 4 59 IPR001623 -
Pvu8g1061 344 SUPERFAMILY HSP40/DnaJ peptide-binding domain 250 335 IPR008971 GO:0006457|GO:0051082
Pvu8g1061 344 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Pvu8g1061 344 Gene3D DnaJ domain 3 127 IPR036869 -
Pvu8g1061 344 Pfam DnaJ domain 4 67 IPR001623 -
Pvu8g1061 344 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 343 - -
Pvu8g1061 344 Pfam DnaJ C terminal domain 168 326 IPR002939 -
Pvu8g1061 344 SUPERFAMILY Chaperone J-domain 4 97 IPR036869 -
Pvu8g1061 344 PANTHER BNAANNG28460D PROTEIN 1 343 - -
Pvu8g1061 344 MobiDBLite consensus disorder prediction 78 99 - -
Pvu8g1061 344 SUPERFAMILY HSP40/DnaJ peptide-binding domain 161 252 IPR008971 GO:0006457|GO:0051082
Pvu8g1061 344 Gene3D - 247 327 - -
Pvu8g1061 344 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Pvu8g1061 344 SMART dnaj_3 3 62 IPR001623 -
Pvu8g1061 344 Gene3D - 167 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1061 Pvu-Chr8 11584233 11586660 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1061 5 74 C2H2 Transcription Factor Family AT1G74250 33.784 1.88e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1061 K09510 - gmx:100818358 547.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1061 8 11584233 11586660 Pvu10g0007 10 385574 389675 PCT