Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1060 ATGGATATGGCTTCCAGTCCGCGCACCGTTGAAGAGATCTTCAAGGACTATAGCGCCAGAAGAACCGCTGTTATTCGCGCTCTCACTCATGACGTTGATGAATTTTACGGACTCTGCGATCCAGATAAGGATAACTTGTGCCTCTATGGACACCCGAATGAGGCCTGGGAAGTTACTCTGCCAGCAGAGGAAGTTCCACCAGAGCTCCCTGAGCCGGCGCTTGGAATCAATTTCGCTAGGGATGGTATGAATCGCAGGGACTGGCTTTCTCTGGTTGCTGTGCACAGTGACTCGTGGTTGGTTTCTGTGGCCTTCTACCTTGGGGCTCGTCTTAATCGCAATGAAAGGAAACGCTTGTTTAGTTTGATCAATGATCTTCCATCCGTTTTTGAAGTTGTGACTGAAAGGAAACCAGTTAAGGACAAGCCCACTGTGGATAGCGGAAGCAAGTCTCGGGGAAGCACCAAGAGAGCCAATGATGGGCAAGTTAAAAGCACCCCAAAGTTTGCTGCGGACGAGGGTTACGAGGAGGATGAAGATGAGCACAACGAAACACTGTGTGGAAGCTGTGGTGGAAATTACAATGCCGACGAGTTTTGGATTTGCTGCGACATATGTGAGAGGTGGTTCCATGGGAAGTGCGTTAAGATCACCCCTGCAAAGGCTGAGAGCATAAAGCAGTATAAATGTCCATCATGCAGCCTGAGGCGTGGCAGGCCCTAG 723 0.5007 MDMASSPRTVEEIFKDYSARRTAVIRALTHDVDEFYGLCDPDKDNLCLYGHPNEAWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLVSVAFYLGARLNRNERKRLFSLINDLPSVFEVVTERKPVKDKPTVDSGSKSRGSTKRANDGQVKSTPKFAADEGYEEDEDEHNETLCGSCGGNYNADEFWICCDICERWFHGKCVKITPAKAESIKQYKCPSCSLRRGRP* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1060 240 ProSiteProfiles Zinc finger PHD-type profile. 184 236 IPR019787 -
Pvu8g1060 240 PANTHER CPG BINDING PROTEIN 3 239 IPR045104 GO:0006355|GO:0042393
Pvu8g1060 240 SMART PHD_3 186 234 IPR001965 -
Pvu8g1060 240 CDD PHD_AL_plant 186 236 IPR044104 -
Pvu8g1060 240 MobiDBLite consensus disorder prediction 140 177 - -
Pvu8g1060 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 234 IPR013083 -
Pvu8g1060 240 Pfam Alfin 9 134 IPR021998 GO:0006355|GO:0042393
Pvu8g1060 240 MobiDBLite consensus disorder prediction 148 162 - -
Pvu8g1060 240 SUPERFAMILY FYVE/PHD zinc finger 175 238 IPR011011 -
Pvu8g1060 240 PANTHER ZINC FINGER, FYVE/PHD-TYPE, ZINC FINGER, RING/FYVE/PHD-TYPE, ALFIN-RELATED 3 239 - -
Pvu8g1060 240 Pfam PHD-finger 187 234 IPR019787 -
Pvu8g1060 240 ProSitePatterns Zinc finger PHD-type signature. 187 233 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1060 Pvu-Chr8 11575689 11579032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1060 4 239 Alfin-like Transcription Factor Family AT5G05610 75.105 6.90e-120 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Pvu8g1060 Alfin 1.4e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1060 - - gmx:100782478 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1060 8 11575689 11579032 Pvu10g0006 10 376690 379801 PCT
Pvu10g0053 10 850188 850589 Pvu8g1060 8 11575689 11579032 PCT