Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1059 ATGGGTTCCTCTCGCTCACGTGGCTCTGCCACTGCCAAAGAACGCCTACGTTGGACACAAGAACTCCATGATCGCTTTGTGGTGGCTGTAAATAGACTAGGGGGCCCTGATAGGGCAACACCAAAAGGTATATTGAAAGGAATGAAGGCTTTGGGTAATTCTCAGCTAAACATTTATCATGTCAAAAGCCACTTGCAGAAATACAGGATCTCCAAACTGATTCCAGAGTCCCCCACAAGAGGAAAACTTGAGAAGAGAAGCATATCAGATATACTTCCAAATTTTAGTTCTATATCTGCTCATCAACTGAAGGAACTCCTTCAAATACAGACAGAGATGCAAAATCGCTTGAGTGATAAAACAGAGGTTCAGAGAAGTTTGAAGGTAAAAATTGAAGCACAAGGAAGGTTCTTGGAGAGATTTGGACAAAGTAGTCATAGCAAAACAATAATTGGAAAAGCATGCAAGTCTTTTGCTTCTTCTACAACTGCACCTCTGCCTTCTCTTTCTGAGGAATCCGAATCATTGGAATCACAAACTGAGAAAGAGCATGAATCAGTAAAAAAGCAAAGGATTTCAGAAGAGGGTGTTTTTCCAACAAGTTTTGAACATGCATCATCCACCCCACCAGAATTCTACAACCAAACATGGAATGTTCCTTGGAGTCAGCTTGCAGCAGCATGCCAATCAACTTTGGATCCCAGTTTCTTATTTTGA 717 0.4142 MGSSRSRGSATAKERLRWTQELHDRFVVAVNRLGGPDRATPKGILKGMKALGNSQLNIYHVKSHLQKYRISKLIPESPTRGKLEKRSISDILPNFSSISAHQLKELLQIQTEMQNRLSDKTEVQRSLKVKIEAQGRFLERFGQSSHSKTIIGKACKSFASSTTAPLPSLSEESESLESQTEKEHESVKKQRISEEGVFPTSFEHASSTPPEFYNQTWNVPWSQLAAACQSTLDPSFLF* 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1059 238 Pfam MYB-CC type transfactor, LHEQLE motif 102 140 IPR025756 -
Pvu8g1059 238 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 8 200 - -
Pvu8g1059 238 Gene3D - 12 73 - -
Pvu8g1059 238 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 13 71 IPR006447 GO:0003677
Pvu8g1059 238 MobiDBLite consensus disorder prediction 175 192 - -
Pvu8g1059 238 SUPERFAMILY Homeodomain-like 12 70 IPR009057 -
Pvu8g1059 238 MobiDBLite consensus disorder prediction 162 208 - -
Pvu8g1059 238 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 8 200 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1059 Pvu-Chr8 11569476 11573409 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1059 3 161 G2-like Transcription Factor Family AT4G28610 41.818 1.48e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Pvu8g1059 Myb_CC_LHEQLE 2.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1059 - - pvu:PHAVU_008G103100g 452.21