Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1050 ATGAAGGATAGACAACGTTGGAGAGCTGAAGAGGATGCTTTACTACGTGCATATGTCAAGCAGTATGGTCCTAGAGAATGGAATCTTGTGTCTCAGCGCATGAACACACCTCTGAATAGGGATGCCAAGTCATGCTTAGAAAGGTGGAAGAACTACCTGAAGCCTGGCATTAAGAAAGGATCTCTTACAGAGGAAGAGCAGCGTCTTGTGATCAACCTTCAAGCAACACACGGAAACAAGTGGAAGAAAATAGCAGCACAAGTTCCAGGTCGCACTGCCAAGAGGTTAGGAAAGTGGTGGGAAGTGTTCAAAGAGAAGCAGCAAAGAGAAACTAAGGGGAATAACTGCACCATTGACCCAATTAACGATAGCAAGTACGAGCATATACTTGAGAGTTTTGCTGAGAAACTAGTGAAAGAAAGGCCTTCACCATCATTTGTTATGGCTACTTCTAATAGTTCTTTTATGCACACTGATCAACCTGCGCCTGCACAGGCCTTGCTTCCATCTTGGCTTTCAAATTCCAATGGCACTGCACCTGTGAGGCCACCCTCCCCTTCTGTGACCCTCAGTCTCTCTCCCTCCACAGTGGCTGCGCCTCCGCTGTGGATGCAACCTGTGAGAGGACCAGACAATGCTGCTCCTCTTGTTTTGGGGAATGTGGCTCCTCATGGAGCTGTTCTAGCATTTGGTGAAAACATGGTCATGTCTGAGCTGGTGGAGTGCTGCAAAGAGTTGGAAGAAGTGCATCATGCTTTGGCAGCACACAAGAAGGAGGCGGCGTGGCGGTTAAGCCGGGTGGAGCTGCAGTTGGAGTCGGAGAAGGCCGGGCGAAGAAGGGAGAAGATGGAGGAAGTTGAAGCAAAGATGAAAGCTCTGAGGGAGGAGCAAACAGCTGCATTGGATAGAATTGAAGCAGAATACAGGGAGCAGTTAGCAGGGTTGAGAAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGCTGAACAATGGGCTGCAAAACACATGCGTCTCACCAAATTTCTAGAACAGGTAGGATACAGATCAAGGCTCACTGAACCAAATGGAAGATAG 1071 0.4837 MKDRQRWRAEEDALLRAYVKQYGPREWNLVSQRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVINLQATHGNKWKKIAAQVPGRTAKRLGKWWEVFKEKQQRETKGNNCTIDPINDSKYEHILESFAEKLVKERPSPSFVMATSNSSFMHTDQPAPAQALLPSWLSNSNGTAPVRPPSPSVTLSLSPSTVAAPPLWMQPVRGPDNAAPLVLGNVAPHGAVLAFGENMVMSELVECCKELEEVHHALAAHKKEAAWRLSRVELQLESEKAGRRREKMEEVEAKMKALREEQTAALDRIEAEYREQLAGLRRDAESKEQKLAEQWAAKHMRLTKFLEQVGYRSRLTEPNGR* 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1050 356 Gene3D - 62 123 - -
Pvu8g1050 356 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 356 - -
Pvu8g1050 356 CDD SANT 6 53 IPR001005 -
Pvu8g1050 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 108 IPR017930 -
Pvu8g1050 356 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Pvu8g1050 356 SMART sant 3 55 IPR001005 -
Pvu8g1050 356 SMART sant 58 106 IPR001005 -
Pvu8g1050 356 Coils Coil 266 325 - -
Pvu8g1050 356 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Pvu8g1050 356 Pfam Myb-like DNA-binding domain 7 67 - -
Pvu8g1050 356 PANTHER TRANSCRIPTION FACTOR AS1 1 356 IPR031055 GO:0005634|GO:0006351|GO:0010338
Pvu8g1050 356 CDD SANT 63 104 IPR001005 -
Pvu8g1050 356 Gene3D - 4 58 - -
Pvu8g1050 356 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 57 IPR017930 -
Pvu8g1050 356 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1050 Pvu-Chr8 11200884 11204015 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1050 1 343 MYB Transcription Factor Family AT2G37630 65.833 2.84e-158 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Pvu8g1050 Myb_DNA-bind_6 3.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1050 K09422 - gmx:100819082 642.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1050 8 11200884 11204015 Pvu8g1050 8 11200884 11204015 ECH
Pvu10g0102 10 1540083 1543180 Pvu8g1050 8 11200884 11204015 PCT