Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1026 ATGGCCACCATGGAGCGCCGTAAAACGATGACCATGAACTGGGACGGCCTCGGCGACGACGATGACGATGAGCACTTTTTTGAGTCCTACAACCGCCTCTCCACTGCCGTGCCCCGTCACTTGATCGACGACGACGACGAGGAGCTAAACGATTTCGAGGAAAGCCGTCTCTCCTTCACCTCCACCATGTCCTCCATGCAATCCATCAATCCCCGAATGTCAAACTTCACCGCCAACTTCACCGGAAAACCCAACTACGACATCTGGATGGCAGCACCGGGATCCATCACCGAACGCAGAAGACAGCTGCTTGGCAGCATGGGCCTCGATGAGAACAAGGAGCTTCTCAAAGCCACCAGTGCCGCCATCGGCCGTGCCATCACCAAAAAATTCGAAAACAACCACGACTACAACAATCCCACCGTCGTTAACAATAACAACTACGCCGTAAAATCAACAATTCGCGTCCAGAAACAGAAAACAACGAGACAAAAAACAGCAAAGCACAGACCATGTCCCTCTCAGCCCGTTTTCGTCCTTGTCCGGTCACGTTCGGAGAACGACATTGACATCTTCTCCATGGAGAGATCACGAAAACACGATTTCATCGGAAAGGTGTCAAAGCAGCGATTGACCAGAACCGCTACGGAGATTACTCGGCGGCGGCATGTTGGCGCCGACAAGACTCGCCTCATCCTGAAGGACGGGGGCGGCAATGCCAATACGGGGAATCGCCAGGTGGTGACGCAGGCAGGAATGTCAGGAGTAGGGGCATTTTTCTTGATAAAGAATCTGGACACGGGGAAGGAGTTTATCGTGAAAGAATACGGAGAAGACGGGACGTGGAATAGGCTAAGCGATTTGCAAACGGGTAAACAGTTGACGATGGAGGAGTTTGAGCGCACCGTGGGGCATTCGGCGGTGGTGACGGAAGCAATGCGGCGAGCGAACGTGGTGCGCAGCAATAAGAAGCTGTCGTCGAGCATTTCGAAGAGTTTGAGATTGAGCAAGAGGCGTGGGGCGTCGCTGCTGAAGAACATAAAGGGCGTAGCGAGCGGGTTCGTTGGGGAGCGTGAGCGAGAGGCTCCGTCTCCAGCTTCGGCTGTGGTGGAGGCAAAGGAGAAGAACGAGTGGGTGCGCGTGCGGCAGACCGGGAAGTCGCAGAAAGAGCTATCGGCGCTGCACTTGTGCCAGGAGTTTCAGGCGCACGAAGGCTGCGTGTGGACGTTAAAGTTCAGTTTGGATGGGAGGTATTTGGCGAGTGCCGGAGAGGACAAGGTCATACACGTGTGGGAGGTGCAGGAGTGTGAAGTCATGTCCATGAAGCCCGAGGAGGGAAACTTGACGCCGATTCATCCCTCGCTGCTTTCTTCCGCTGAGCGCTCGGAGACGCCGCCATTGTCGGCGGATAAGAAAAAGAAAGGAAAGAATGGAAGCAAGAGAGGGGACTCTATTCCGGACTACGTTCAGGTTCCGGAAACCGTCTTCACGCTCTCAGAGAGACCCTATTGTTCTTTCACTGGCCATTTGGATGAGGTCTTGGACTTGTCCTGGTCCAAATCTCAGGTACTTCTCTCGTCTTCCATGGATAAAACAGTGAGGTTGTGGGATTTGGAAACTAAGTCGTGCCTGAAATTCTTTGCACATAACGACTATGTAACCTGCGTGCAGTTCAACCCCGTGGACGAAGATTATTTCATTAGTGGATCTCTTGATGCCAAGATCAGAATGTGGAACATCCCTGCACGTCTCGTTGTGGATTGGACTGATATACATGAAATGGTCACTGCTGTTTCTTACACCCCTGATGGCCAGGGTGTTCTAGTTGGTACACAAAAAGGGAACTGTCGAAGTTACACCATAGAAGATTACAAGTTAACTCAATCCAGCACAATCGAGCTTCGAAACAAAAAGAAAAATCTGCTGAAAAAGGTTACTGGTTTCCAGTTTTCCCCAGGTGACCCATCACAAGTGCTTATTACTTCAGGCGATTGTAGGACAAGAGTTGTGGAGGGCACACAAGTTGTCCAAAAGTTTATAGGTTTTCGAAATATGAGTAGCCAAATTTCAGCTTCTTTTAGTCCAAATGGAAGGTACATCATAAGTGCAAGTGAAGACTCACAAGTGTATGTTTGGAAGCATGAAGAGATGCATTATAATGGAAAAGGAAGGAATGTGATTGCAAACCAAGCTCATGAACATTTCCCATGTAAAGATGTTTCAGTAGCAATACCTTGGCCTTGCAGCGTTAGGGGTGATCCACCACCATCATTGGTGGCAGGGCAAAACCCCAAAAAGAACTCAAAACGTCCACAAGATGACCCTGCCCCTAGTGCAAACGGCAAGAAAATGTTGCCACCCCTCCCAAAGAAAAGTAGCAACCAAGCCACAGAAAGTAGCCTGGGCTCCCCAGAGAATGAGCCTGCAGCAATCACACGCACAGAATCTGGAGTTGGAGATTCAGTTAGGAACAGTAAGAGATTGATGTCATCCACTTCTAAGAAAATTAACATCCAAACAATGGAAGGTGACTACACTCCCATAGAAGAAGAACTTGAAGCAATTTCTGGGACAGACAATGGATTAGGTGATTCTCTTGCTTCAGCCTCCCCATCAGGTAGGTATGGTGGTGATTCAGCTTCTATATCTGCTGCAACTACTCCATCAAATGCATCTTGTTCTTCCAATTACTCATCAAGTGATGGTTCCAATGGTGCCTCATCCATGCTAAACCAATCAGCATGGGGAATGGTAATTGTGACAGCTGGGTTTGGAGGTGAAATTAGGTGTTATCAGAATTTTGGGCTACCTAGGAGGATGAGACAGAACACTCTCTTCATGGGACCTACATAA 2853 0.4946 MATMERRKTMTMNWDGLGDDDDDEHFFESYNRLSTAVPRHLIDDDDEELNDFEESRLSFTSTMSSMQSINPRMSNFTANFTGKPNYDIWMAAPGSITERRRQLLGSMGLDENKELLKATSAAIGRAITKKFENNHDYNNPTVVNNNNYAVKSTIRVQKQKTTRQKTAKHRPCPSQPVFVLVRSRSENDIDIFSMERSRKHDFIGKVSKQRLTRTATEITRRRHVGADKTRLILKDGGGNANTGNRQVVTQAGMSGVGAFFLIKNLDTGKEFIVKEYGEDGTWNRLSDLQTGKQLTMEEFERTVGHSAVVTEAMRRANVVRSNKKLSSSISKSLRLSKRRGASLLKNIKGVASGFVGEREREAPSPASAVVEAKEKNEWVRVRQTGKSQKELSALHLCQEFQAHEGCVWTLKFSLDGRYLASAGEDKVIHVWEVQECEVMSMKPEEGNLTPIHPSLLSSAERSETPPLSADKKKKGKNGSKRGDSIPDYVQVPETVFTLSERPYCSFTGHLDEVLDLSWSKSQVLLSSSMDKTVRLWDLETKSCLKFFAHNDYVTCVQFNPVDEDYFISGSLDAKIRMWNIPARLVVDWTDIHEMVTAVSYTPDGQGVLVGTQKGNCRSYTIEDYKLTQSSTIELRNKKKNLLKKVTGFQFSPGDPSQVLITSGDCRTRVVEGTQVVQKFIGFRNMSSQISASFSPNGRYIISASEDSQVYVWKHEEMHYNGKGRNVIANQAHEHFPCKDVSVAIPWPCSVRGDPPPSLVAGQNPKKNSKRPQDDPAPSANGKKMLPPLPKKSSNQATESSLGSPENEPAAITRTESGVGDSVRNSKRLMSSTSKKINIQTMEGDYTPIEEELEAISGTDNGLGDSLASASPSGRYGGDSASISAATTPSNASCSSNYSSSDGSNGASSMLNQSAWGMVIVTAGFGGEIRCYQNFGLPRRMRQNTLFMGPT* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1026 950 MobiDBLite consensus disorder prediction 444 486 - -
Pvu8g1026 950 PRINTS G protein beta WD-40 repeat signature 419 433 IPR020472 -
Pvu8g1026 950 PRINTS G protein beta WD-40 repeat signature 524 538 IPR020472 -
Pvu8g1026 950 PRINTS G protein beta WD-40 repeat signature 566 580 IPR020472 -
Pvu8g1026 950 Pfam WD domain, G-beta repeat 542 579 IPR001680 GO:0005515
Pvu8g1026 950 Pfam WD domain, G-beta repeat 504 537 IPR001680 GO:0005515
Pvu8g1026 950 Pfam WD domain, G-beta repeat 689 713 IPR001680 GO:0005515
Pvu8g1026 950 Pfam WD domain, G-beta repeat 398 431 IPR001680 GO:0005515
Pvu8g1026 950 SUPERFAMILY WD40 repeat-like 394 717 IPR036322 GO:0005515
Pvu8g1026 950 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 546 580 - -
Pvu8g1026 950 Gene3D - 484 739 IPR015943 GO:0005515
Pvu8g1026 950 ProSiteProfiles Trp-Asp (WD) repeats profile. 546 580 IPR001680 GO:0005515
Pvu8g1026 950 MobiDBLite consensus disorder prediction 861 905 - -
Pvu8g1026 950 Gene3D - 276 460 IPR015943 GO:0005515
Pvu8g1026 950 MobiDBLite consensus disorder prediction 790 810 - -
Pvu8g1026 950 MobiDBLite consensus disorder prediction 465 481 - -
Pvu8g1026 950 ProSiteProfiles Trp-Asp (WD) repeats profile. 690 713 IPR001680 GO:0005515
Pvu8g1026 950 MobiDBLite consensus disorder prediction 817 840 - -
Pvu8g1026 950 ProSiteProfiles Trp-Asp (WD) repeats profile. 400 441 IPR001680 GO:0005515
Pvu8g1026 950 ProSitePatterns Trp-Asp (WD) repeats signature. 524 538 IPR019775 -
Pvu8g1026 950 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 400 434 - -
Pvu8g1026 950 PANTHER WD REPEAT DOMAIN 44 9 942 IPR040324 -
Pvu8g1026 950 MobiDBLite consensus disorder prediction 753 842 - -
Pvu8g1026 950 SMART WD40_4 499 537 IPR001680 GO:0005515
Pvu8g1026 950 SMART WD40_4 672 713 IPR001680 GO:0005515
Pvu8g1026 950 SMART WD40_4 635 671 IPR001680 GO:0005515
Pvu8g1026 950 SMART WD40_4 890 932 IPR001680 GO:0005515
Pvu8g1026 950 SMART WD40_4 540 579 IPR001680 GO:0005515
Pvu8g1026 950 SMART WD40_4 581 620 IPR001680 GO:0005515
Pvu8g1026 950 SMART WD40_4 393 432 IPR001680 GO:0005515
Pvu8g1026 950 ProSitePatterns Trp-Asp (WD) repeats signature. 419 433 IPR019775 -
Pvu8g1026 950 ProSiteProfiles Trp-Asp (WD) repeats profile. 506 546 IPR001680 GO:0005515
Pvu8g1026 950 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 9 942 - -
Pvu8g1026 950 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 506 540 - -
Pvu8g1026 950 MobiDBLite consensus disorder prediction 857 905 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1026 Pvu-Chr8 10843744 10847698 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1026 505 718 Miscellaneous Gene Families AT5G08390 21.622 6.06e-09 58.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1026 8 10843744 10847698 Pvu8g1026 8 10843744 10847698 ECH
Pvu8g1026 8 10843744 10847698 Pvu10g0137 10 2094836 2100482 PCT