Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1021 ATGGCGGAAACCGACCCTTCGGGGGCGCTCCGCAACCTCACCCGCGTCGCCACCCAAATTTCCTACCTCTCCGTCTTCAAGCCCCTCCTCAGGACCCAATGCTGCGACCTCGCTCGCCGCATACGCTTCCTCGCTCCTCTCTTCCACGAATTGCATGACGACGTCGTGTTCAGTGGCGCCGTTCCCTTCCCCGCGCTCCAGGACGCGCTCTTCAAGGCCAGGGATTTGCTCCAATTCGCCACCCGCACAAGCCAGGTTTTCATGATACTGGACAGAGAGCAAGTTAAGCACAGATTCAAAGATGTTGCTGTTCGTTTTGAACATGCTATTAGCAAGATCTCCTTTGACGAGCTTGATGTTTCGGAAGAAATCAAGGAACAGGTTGCACTTGTGACCACTCAGTTTAGAAGAGCTAAAGAGCAGTTTGATCCACCGGGTTTTCAGCTTTATGAACAACTTTTGTCTGTTTACAACCAGAGCTATGATGTGAATGCCGAAACTGCTGAACTAAGTTTAATCAGTGAAAAACTACAATTTATCAATGTGGACGATGTCAAGCAAGAGTCACTTGCTCTAGAAAAGATGGCTGTAGAGAGGAGGGATCATTCTCAGAAAAGCATACAGGATATGTCGTTGGTTGTGCTGAAAAAAATCCAAGATTTCTTAATGGTGGAATCAGGAAACATTATCGTGTCAGCAAGTGAGGATTTATCTCGACAAACTGATGAGTCATATGTGAATGTGAAACTATGTCCACAATCACTGGTTATACCTGATGAGTTTCGCTGCCCAATATCTCTAGAGCTAATGAAAGATCCTGTTATCATTTGCACAGGGCAGACTCGTGTATTTCAAATCTCTGTTTACTTTTCCCATCCAAGATGTAAGTAG 891 0.4624 MAETDPSGALRNLTRVATQISYLSVFKPLLRTQCCDLARRIRFLAPLFHELHDDVVFSGAVPFPALQDALFKARDLLQFATRTSQVFMILDREQVKHRFKDVAVRFEHAISKISFDELDVSEEIKEQVALVTTQFRRAKEQFDPPGFQLYEQLLSVYNQSYDVNAETAELSLISEKLQFINVDDVKQESLALEKMAVERRDHSQKSIQDMSLVVLKKIQDFLMVESGNIIVSASEDLSRQTDESYVNVKLCPQSLVIPDEFRCPISLELMKDPVIICTGQTRVFQISVYFSHPRCK* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1021 296 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 7 281 - -
Pvu8g1021 296 Gene3D - 10 116 IPR036537 GO:0007166
Pvu8g1021 296 ProSiteProfiles U-box domain profile. 256 296 IPR003613 GO:0004842|GO:0016567
Pvu8g1021 296 PANTHER U BOX DOMAIN-CONTAINING 7 281 - -
Pvu8g1021 296 Pfam U-box domain 257 281 IPR003613 GO:0004842|GO:0016567
Pvu8g1021 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 253 282 IPR013083 -
Pvu8g1021 296 SUPERFAMILY RING/U-box 257 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1021 Pvu-Chr8 10749659 10753065 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1021 3 281 U-box Gene Family AT3G46510 36.140 9.60e-54 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1021 - - pvu:PHAVU_008G099600g 578.17