Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1020 ATGAAAGTATATACTGATGCTGACTATGCAGGATCGATTGTTGATAGGAGATCCACCACAGGCTACTACATGTTCTTGGTTGGAAATCTGGTGATATTGAGGAGCAAGAAGCAAAATGTAGTTGCAAGATCAAGTGCAGAGGCAGAATTTAGAGTCATGGCTCAAGGGGTGTGTGAACTATTATGGATGAAGATCATACTTGATGACCTAAAAATAAAATATGAAGCTCCTATGGGCTTGACATATGAACGATCTTGTATAAAGAAATGGCTTGAAGCAGGGCATGGAACGTGTCCCAAGACTCAGCAGATTCTTTCCAGTCCCATCCTCATACCCAACCATGCTTTATATGGCCTGATATCAAGTTGGTGTGAGGCAAATGGAGTGGAACCACCTAATAGGTTAGGGAATTTATGGCTCTGTAAGACAACATCAGATGGCTCTTCTGAATTAGTAGATCTTGATATCTTAGTGAGCAAACTCTCTTCCAGTGCTATTGAAGATCAACGAAGTGCTGTAGGGGAGCTCCGACTTCTTGCCAAGCAAAATAGTCAAAATCGAATGCTTATTGCTGAAGCTGGTGCTATACCCCGCCTTGTTGATCTCCTCAAAACACCTGATGCTGGCACCCAAAAGCATGCAGTTACTGCTCTTCTGAACTTGTCTATCTATGCGGATAATAAAGAGCGTATCATGGCTTCTGGGGCTGTGCCAGGCATCCTTCATGTGCTAGAACATGGTACTATGGAAGCCCGGGAAAATGCAGCAGCCACATTTTTCAGCCTTTCTGGAGTGGATGAGAACAGAGTAGCAATTGGTGCATCTGGAGCAATCCAGGCATTAGTTACTCTATTTTGCGAGGGAAGTCAAAGAGGGAAGTTGGATGCTGCAAAAGCACTTTTCAATCTGTGTTTATCTCAAGGAAATAAAGGACGAGCAATTAGGGCTGGTATTGGGCCCAAGTTGATAGAAATGCTAATAGAACCTGATGGGGCAATGAGGGACGAGGCATTGGCAATAATGGCTGTAGTAGCTAGCCATCCTGATGGAAAAGCAGCAATTGGATCTTTGAATGTTGTATCCACTTTGGTGGAATTAATCAGTGATGGATCTCCTAGGAACAAAGAGAATGCAACTTCAGTGTTGGTTCTCCTCTGTCATGGAGATCCTCTACACTTGTCAATTGTCAGTTCGCCTAGGGTGATCATTCCTCTCTTGGACCTGGCAGAAAATGGTTCAGAAAGGGCCAGGCGGAAAGCTGGCCAGCTTCTTGAGTTGATTGGAAATCATTGTGAACATACTATGAAAACTTCCAACTAG 1320 0.4379 MKVYTDADYAGSIVDRRSTTGYYMFLVGNLVILRSKKQNVVARSSAEAEFRVMAQGVCELLWMKIILDDLKIKYEAPMGLTYERSCIKKWLEAGHGTCPKTQQILSSPILIPNHALYGLISSWCEANGVEPPNRLGNLWLCKTTSDGSSELVDLDILVSKLSSSAIEDQRSAVGELRLLAKQNSQNRMLIAEAGAIPRLVDLLKTPDAGTQKHAVTALLNLSIYADNKERIMASGAVPGILHVLEHGTMEARENAAATFFSLSGVDENRVAIGASGAIQALVTLFCEGSQRGKLDAAKALFNLCLSQGNKGRAIRAGIGPKLIEMLIEPDGAMRDEALAIMAVVASHPDGKAAIGSLNVVSTLVELISDGSPRNKENATSVLVLLCHGDPLHLSIVSSPRVIIPLLDLAENGSERARRKAGQLLELIGNHCEHTMKTSN* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1020 439 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 78 427 - -
Pvu8g1020 439 SMART arm_5 265 305 IPR000225 GO:0005515
Pvu8g1020 439 SMART arm_5 224 264 IPR000225 GO:0005515
Pvu8g1020 439 SMART arm_5 183 223 IPR000225 GO:0005515
Pvu8g1020 439 SMART arm_5 347 387 IPR000225 GO:0005515
Pvu8g1020 439 Gene3D - 294 437 IPR011989 -
Pvu8g1020 439 Pfam U-box domain 76 127 IPR003613 GO:0004842|GO:0016567
Pvu8g1020 439 PANTHER U BOX DOMAIN-CONTAINING 78 427 - -
Pvu8g1020 439 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 194 236 IPR000225 GO:0005515
Pvu8g1020 439 SMART Ubox_2 71 123 IPR003613 GO:0004842|GO:0016567
Pvu8g1020 439 Gene3D - 133 293 IPR011989 -
Pvu8g1020 439 Pfam Armadillo/beta-catenin-like repeat 266 304 IPR000225 GO:0005515
Pvu8g1020 439 Pfam Armadillo/beta-catenin-like repeat 183 222 IPR000225 GO:0005515
Pvu8g1020 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 130 IPR013083 -
Pvu8g1020 439 SUPERFAMILY RING/U-box 77 133 - -
Pvu8g1020 439 ProSiteProfiles U-box domain profile. 79 130 IPR003613 GO:0004842|GO:0016567
Pvu8g1020 439 CDD RNase_HI_RT_Ty1 2 78 - -
Pvu8g1020 439 SUPERFAMILY ARM repeat 153 427 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1020 Pvu-Chr8 10737731 10743143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1020 79 438 U-box Gene Family AT3G46510 58.172 1.40e-139 413
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1020 - - pvu:PHAVU_008G099500g 858.211