Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g1011 ATGTCGTTGTTCGTCGGGGATCTTGACCAGAACATCAACGAACAGCAGCTCCATGATCTCTTCAATGACGTTGGCCAAGTTGTTTCCGTTCGAATTTGCAAGGACTATCAAACTAAGACCTCCCTTGGTTACGGCTACGTCAATTTCAGTAGTGCTCAGCATGCCGCAAAAGCATTGGATGTGCTAAATTTCACTCCGTTGAACGGGAAACCCATTAGGGTAATGTACTCTATTCGGGACCCCAGTTTTCGTAATAGTGGTATAGCTAACGTTTATATAAAGAATTTGGATAAGTCAATCGATGACAAGTGTCTATTCGATGTCTTTTCGTCTTTTGGGAATATTCTATCTCAAAGAGTTGCGAGGGATGCTTCTGGCGAGTCTAGAGGCTATGGTTTTGTGCAGTTTGAGACGGAAGCATCTGCAAAAGAAGCGATTCAAAAGTTAAACGGCATGCTGCTCAATAATAAACAGCTCTATGTGGGTCCTTTCGTGCGAAAGGAGGATAGAGAGAGTTTTCATGGTACTGACGCGAAGTTTAATAATGTTTATGTAAGTAACCTGTCAAAGACATTAACGGATGCTGACCTGCAGATAATTTTTGGAGAATATGGGACTATTACTAGTGCTGTAGTGATGAAAGATGTAGTTGGTGAATCAAAAGGTTTTGGTTTTGTCAATTTTGCAAACGCAGACGATGCTGCTAAAGCTCGGGACAGTCTTGATGGCATTTTTGTTTGTGGTCAGAAGTGGTACGTTGGAAGAGCCATGAGAAAATCTGAAAGGGAGCTTGATGTGAAAGGGGTACTGAATAGGAAGCCTTACTTTCCTAAGGAAGATACAAACTTGTATATAAAGAACTTGGACGATAGTATTGGTGATGAAGAACTCAAAGAATATTTCTCTGAGTTTGGTGCAATAACCTCAGCGTGTGTTATGAGAGATGCAAATGGATTTAGTAAAGGATCTGGATTTGTTGCATATACAGATAAGGAGGCAGCAAATCGGGCTCTTGAATCGATGAATGGTCGAATGGTTGCTGGCAAACCTCTCTATGTTGCCATTGCACAGACAAAGGAAGAGAGAAAAGCAAGGTTACAGGCATTATTTTCAGAACCTAGGGCTTCTCCAACAGTCCCTAATCTTGCACCTCAGCATCCAATGTACACTATACGGGCTCCTGGGCTAGAACCACCATTTTTGCATAGGCAAACACATCCAGACTTCATAACTCAAGCTTCAATTAATTTGCAGCAGCATCTTGCTCGCGGATTGACGCCAACTGGTCCTCCAATAACAAACTTCTATGCAGTTCATGGGCACCCGCAGCCAGGAGGATACCTACAAGAAGCTCCTGTGCAACCGCTCATGTTACACCCACAGATGCTTCCAACTGGCAATTTCTATCAAGGTCCTCCTGGCCCCAACATGCAAAATATTCATCCCGCAGGAGTACCGGGAGAAATGATCCTTTTTGGCTGTGTTCCGCCGGTACCACTTCAGGCCTTGGCATCAGCCGTTGCCAATGCTAATCCTGAACTCAAGAGGATTCTGCTTGGTGAAAGTTTATACCCTTTAGTAGAAAAGCTGGAGCCTGATGCGGCATCAAGGGTTACTGGTATGCTTTTAGAGATGGACCACCCTGAGGTGTTACATCTGATTGAGTCGCCACGTGCTCTCTCGGCAAAAGTTGCGGAGGCCATGGCTTCATTGATACAAGTAGAAGAACAACAACCAAGCTGCCCAGCTGATGAACTTGGTTTTGTCTCTCTCGATGACGATCCATGGTTTTAG 1794 0.4415 MSLFVGDLDQNINEQQLHDLFNDVGQVVSVRICKDYQTKTSLGYGYVNFSSAQHAAKALDVLNFTPLNGKPIRVMYSIRDPSFRNSGIANVYIKNLDKSIDDKCLFDVFSSFGNILSQRVARDASGESRGYGFVQFETEASAKEAIQKLNGMLLNNKQLYVGPFVRKEDRESFHGTDAKFNNVYVSNLSKTLTDADLQIIFGEYGTITSAVVMKDVVGESKGFGFVNFANADDAAKARDSLDGIFVCGQKWYVGRAMRKSERELDVKGVLNRKPYFPKEDTNLYIKNLDDSIGDEELKEYFSEFGAITSACVMRDANGFSKGSGFVAYTDKEAANRALESMNGRMVAGKPLYVAIAQTKEERKARLQALFSEPRASPTVPNLAPQHPMYTIRAPGLEPPFLHRQTHPDFITQASINLQQHLARGLTPTGPPITNFYAVHGHPQPGGYLQEAPVQPLMLHPQMLPTGNFYQGPPGPNMQNIHPAGVPGEMILFGCVPPVPLQALASAVANANPELKRILLGESLYPLVEKLEPDAASRVTGMLLEMDHPEVLHLIESPRALSAKVAEAMASLIQVEEQQPSCPADELGFVSLDDDPWF* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g1011 597 Gene3D - 170 273 IPR012677 -
Pvu8g1011 597 SMART rrm2_1 182 254 IPR003954 GO:0003676
Pvu8g1011 597 SMART rrm2_1 282 354 IPR003954 GO:0003676
Pvu8g1011 597 SMART rrm2_1 90 162 IPR003954 GO:0003676
Pvu8g1011 597 CDD RRM1_I_PABPs 2 81 - -
Pvu8g1011 597 Gene3D - 1 82 IPR012677 -
Pvu8g1011 597 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 3 73 IPR000504 GO:0003723
Pvu8g1011 597 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 91 159 IPR000504 GO:0003723
Pvu8g1011 597 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 183 251 IPR000504 GO:0003723
Pvu8g1011 597 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 283 351 IPR000504 GO:0003723
Pvu8g1011 597 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 2 571 IPR006515 GO:0003723
Pvu8g1011 597 SUPERFAMILY RNA-binding domain, RBD 2 170 IPR035979 GO:0003676
Pvu8g1011 597 SUPERFAMILY PABC (PABP) domain 454 581 IPR036053 GO:0003723
Pvu8g1011 597 SMART rrm1_1 282 354 IPR000504 GO:0003723
Pvu8g1011 597 SMART rrm1_1 182 254 IPR000504 GO:0003723
Pvu8g1011 597 SMART rrm1_1 2 75 IPR000504 GO:0003723
Pvu8g1011 597 SMART rrm1_1 90 162 IPR000504 GO:0003723
Pvu8g1011 597 Gene3D - 83 169 IPR012677 -
Pvu8g1011 597 Pfam Poly-adenylate binding protein, unique domain 507 569 IPR002004 GO:0003723
Pvu8g1011 597 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 181 258 IPR000504 GO:0003723
Pvu8g1011 597 PANTHER POLYADENYLATE-BINDING PROTEIN 2 578 - -
Pvu8g1011 597 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 499 576 IPR002004 GO:0003723
Pvu8g1011 597 PANTHER RNA BINDING PROTEIN 2 578 - -
Pvu8g1011 597 SUPERFAMILY RNA-binding domain, RBD 275 368 IPR035979 GO:0003676
Pvu8g1011 597 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 281 358 IPR000504 GO:0003723
Pvu8g1011 597 SUPERFAMILY RNA-binding domain, RBD 177 263 IPR035979 GO:0003676
Pvu8g1011 597 SMART poly_2 511 574 IPR002004 GO:0003723
Pvu8g1011 597 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 89 161 IPR000504 GO:0003723
Pvu8g1011 597 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 1 79 IPR000504 GO:0003723
Pvu8g1011 597 Gene3D - 274 367 IPR012677 -
Pvu8g1011 597 CDD RRM2_I_PABPs 87 163 IPR045305 -
Pvu8g1011 597 Gene3D - 497 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g1011 Pvu-Chr8 10444548 10447990 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g1011 2 594 Eukaryotic Initiation Factors Gene Family AT1G49760 49.123 0.0 565
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g1011 K13126 - gmx:100799386 702.59
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g1011 8 10444548 10447990 Pvu3g0491 3 5652990 5653695 ECH
Pvu8g1011 8 10444548 10447990 Pvu8g1011 8 10444548 10447990 ECH