Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Pvu8g0969 | ATGGAGTGCATCAGCCCTACCTCTTGTGAAGGGTCATCATCCAAGAACAAGATCAGCAAGGAGAAAAAGGGTGTGAAGAAAGGCAACAAGGGAGGGGTGAAGCTTTCCACTGATCCACAAAGCGTGGCAGCCAGAGAAAGAAGGCACAGAATCAGTGACAGGTTTAAGATCCTTCAGAGCATGGTCCCGGGTGGGAGCAAGATGGACACAGTGTCCATGTTGGAGGGAGCCATTCACTACGTCAAGTTCCTCAAATCCCAGATTTGGCTCCACCAAGCATTGATAAACTTTCTAGATATTGATCATCATGAAGCTCCCGTGCACCTCCCTGCAGAGTATAATCTCCCTCATGAACATTCCATTTCTCTTCAGCAAAACCCTTCTTCAGTTTCGGTGCATTCTCAGCTGAGTCTACCACAGCCACCACTAGCACAGTGCTGCTTCCAAGGTGAAGAAGATTGTAACACCTTTGATGCCACTATGAAATATTGGCCAGCTTAG | 501 | 0.477 | MECISPTSCEGSSSKNKISKEKKGVKKGNKGGVKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEGAIHYVKFLKSQIWLHQALINFLDIDHHEAPVHLPAEYNLPHEHSISLQQNPSSVSVHSQLSLPQPPLAQCCFQGEEDCNTFDATMKYWPA* | 167 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Pvu8g0969 | 166 | CDD | bHLH_AtIND_like | 36 | 95 | - | - | |
Pvu8g0969 | 166 | Gene3D | - | 40 | 92 | IPR036638 | GO:0046983 | |
Pvu8g0969 | 166 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 40 | 100 | IPR036638 | GO:0046983 | |
Pvu8g0969 | 166 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Pvu8g0969 | 166 | Pfam | Helix-loop-helix DNA-binding domain | 45 | 84 | IPR011598 | GO:0046983 | |
Pvu8g0969 | 166 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 35 | 84 | IPR011598 | GO:0046983 | |
Pvu8g0969 | 166 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 14 | 153 | IPR045843 | GO:0003700|GO:0006355 | |
Pvu8g0969 | 166 | PANTHER | TRANSCRIPTION FACTOR LAX PANICLE 1 | 14 | 153 | - | - | |
Pvu8g0969 | 166 | SMART | finulus | 41 | 90 | IPR011598 | GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Pvu8g0969 | Pvu-Chr8 | 9818538 | 9819038 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Pvu8g0969 | 25 | 130 | Basic Helix-Loop-Helix Transcription Factor Gene Family | AT3G21330 | 44.954 | 2.05e-22 | 90.1 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | bHLH | Pvu8g0969 | HLH | 1.3e-07 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Pvu8g0969 | - | - | gmx:113000114 | 229.95 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Pvu8g0969 | 8 | 9818538 | 9819038 | Pvu8g0969 | 8 | 9818538 | 9819038 | ECH | |
Pvu8g0969 | 8 | 9818538 | 9819038 | Pvu10g0762 | 10 | 22153698 | 22154300 | PCT |