Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0946 ATGAAGACTAATACTAACGTTTCTGGGGAGAGGAAATCACGCAAGAGACGCAGTAGTGGAAATGATTCTGTGGAAAACACTCTTGAAAAGTGGAAGGAGTATAACAGGCAGCAACAACTTGGGTCAAGGGAAAATGGGGCGGAAGTGATTCACAAAGTTCCTGCAAAAGGGTCGAGAAAAGGGTGCATGAGAGGTAAGGGAGGGCCTCAGAACTCCGATTGCAAGTTCAGAGGTGTGAGGCAGAGAATTTGGGGAAAATGGGTTGCTGAGATTCGCGAGCCAATCAATGGAAAGCTTGTGGGGGAAAAAGCAAATAGGCTTTGGCTTGGTACTTTCTCCACTGCACTTGAAGCTGCTCTTGCTTATGATGAAGCTGCCAAGGCCATGTACGGCCCCTCTGCCCGTTTGAATTTTCCCGAGCCTTCTGTGGAGCCAGTAGACTCTAATGGATCATCATCTAGTGGATGTGATAAAAAATCACCAAGTGATTCTTCGGAGAATGATGATGATGTTGCAAAAGCTGAGTTGGAAAGGAACCTTCATCAGCCTCATGAAGAGAAACCAAGGTTTTCTGAGATTGGTGTCTTTGAGGTAACAGAAGAGAAACAGGTTCTTTCAGGAGGTTGTGTCGCTGATGAATCAATAGAGGACTTGAAGGAAACGACAACTGGATTTGAACAATGTCAAATAAATTTGAAGAATATTAAGTCTGAAATGCCTGAAAAAAGTGAAGGAATAGACAGAGAATTGGAGAGGGTTTTGAAAAATTCTGGCCTAGGTGAAAAGGGTAATAATCTCTTGCAAAAGGAGCCCGTGGAGATACCCATGAATACAGGAGCTAACTACTGCAGCTCTTCTGATGCTGCTGAACATGACATTGTGGAGAAGAGTGAAGAAACAAGAGCAGAATCAGTTGAAACTTTAAAATCATGTGAGTTAAGCTGCAGCAACCATTGCCTTGGATATATGCATAACATGCTGCCAGATAGCAATACAAGACCACATTCTGAGCACTTTAATAACACCCAAACTGAGGTATCTATAGCAAGAAAACATACCGAGGAAGTAATTTCTGAAATCCTGGGGCTATGTCACAGCAAGTGCTTAAAGATTAGTCATGATCAGACACCACATGAGCCTTATAGAACTGAACATTTTGATGAGATGAGAACTAAGCTGAAGTGTTTGGAATGCAAGCTGAAAGCACATTCTATTCATTACAAGAATCAGGCACCCGTAGTTGGGGATTCCAATTATCCTTCAATGCAGGGAATTCATATGTTTGGTGGTGGCACTGTTGGACCAATTGAAAGCATGTCCCAAATTGATGCTATGAACAACATCAACACAAGCAGAAATTCCCTACCTGGATTTAGTTCTGGCCATAGTAGGAAGTTGTGTGATCTTTCTCAACAGCTACACAAACTTGGTGGTTACCTTCCTGAGCATTGGAATAATATGCAGTTTGCAGACTTGGAAGTGGGTTATGATTATAGCTTCTTAAATCCTGATTATGATTTTGGCTTATTGGAAGAGCAGAAGTTACTTGATGTATGCTTTCCACAAATAGGATCTTAG 1578 0.4202 MKTNTNVSGERKSRKRRSSGNDSVENTLEKWKEYNRQQQLGSRENGAEVIHKVPAKGSRKGCMRGKGGPQNSDCKFRGVRQRIWGKWVAEIREPINGKLVGEKANRLWLGTFSTALEAALAYDEAAKAMYGPSARLNFPEPSVEPVDSNGSSSSGCDKKSPSDSSENDDDVAKAELERNLHQPHEEKPRFSEIGVFEVTEEKQVLSGGCVADESIEDLKETTTGFEQCQINLKNIKSEMPEKSEGIDRELERVLKNSGLGEKGNNLLQKEPVEIPMNTGANYCSSSDAAEHDIVEKSEETRAESVETLKSCELSCSNHCLGYMHNMLPDSNTRPHSEHFNNTQTEVSIARKHTEEVISEILGLCHSKCLKISHDQTPHEPYRTEHFDEMRTKLKCLECKLKAHSIHYKNQAPVVGDSNYPSMQGIHMFGGGTVGPIESMSQIDAMNNINTSRNSLPGFSSGHSRKLCDLSQQLHKLGGYLPEHWNNMQFADLEVGYDYSFLNPDYDFGLLEEQKLLDVCFPQIGS* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0946 525 MobiDBLite consensus disorder prediction 7 30 - -
Pvu8g0946 525 MobiDBLite consensus disorder prediction 1 30 - -
Pvu8g0946 525 MobiDBLite consensus disorder prediction 144 160 - -
Pvu8g0946 525 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 404 - -
Pvu8g0946 525 PRINTS Ethylene responsive element binding protein signature 76 87 IPR001471 GO:0003700|GO:0006355
Pvu8g0946 525 PRINTS Ethylene responsive element binding protein signature 105 121 IPR001471 GO:0003700|GO:0006355
Pvu8g0946 525 CDD AP2 74 140 IPR001471 GO:0003700|GO:0006355
Pvu8g0946 525 Pfam AP2 domain 74 131 IPR001471 GO:0003700|GO:0006355
Pvu8g0946 525 SMART rav1_2 75 145 IPR001471 GO:0003700|GO:0006355
Pvu8g0946 525 Gene3D AP2/ERF domain 74 140 IPR036955 GO:0003700|GO:0006355
Pvu8g0946 525 ProSiteProfiles AP2/ERF domain profile. 75 139 IPR001471 GO:0003700|GO:0006355
Pvu8g0946 525 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 4 404 - -
Pvu8g0946 525 SUPERFAMILY DNA-binding domain 75 139 IPR016177 GO:0003677
Pvu8g0946 525 MobiDBLite consensus disorder prediction 139 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0946 Pvu-Chr8 9500856 9502893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0946 1 166 AP2-EREBP Transcription Factor Family AT2G40340 51.479 6.39e-44 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Pvu8g0946 AP2 4.3e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0946 - - gmx:100500303 794.653