Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0894 ATGGCAGATCCTGCTAGTGATGGGAGTCTTGAACGTGATATTGAGCAAATACTCACTGGCTTGAAGAAAGGAACTCAATTGATAAAGTACAGTCGAAAAACGAAGCCAAAAGTTTGCCCATTCAAACTTTCTCTGGATGAGAAAACATTGATCTGGATTTCTTCTCATAAGAAGGAAAGGATTTTGAAATTATCTTCAGTTTCACAAATTATCTCTGGACAAAGAACTGTTGTTTTTAGAAGATATTTACAACAAGAAAATAATTATCTTTCATTTTCACTTATTTATAATAGCAGGGAGAGAACACTTGAATTGATATGCAAGGACAAAGATGAGACAGAGACATGGTTTAGAGGCCTTAAGACATTAATTTCTACAGAAAAGTTTAATAGGCGCATTGGAAGTGAATTTTTTTATTACAGATGCGGGTTAGAGCGTGCTAATATGCAACCAAGAACAAGTATTGGAGATGGTTTTCGTGTGAGTGTGTCAAGTACACCTAGTGTTTCAAGTGCAGGATCAGGACCAGATGACATAGAATCACTAGGTGATGTTTATGTATGGGGAGAGGTTTGGGCAGATGGGATTTCACCTGATGGATTTGTTACTCAAGCCCCTTCCACAACAGATGTATTGATTCCCAAACCATTGGAGTCAAGTGTTGTTCTTGATGTTCAACAAATTGCATCTGGCATGCGACACATTGCTTTGGTAACAAGGCAAGGGGAGGTTTTTACATGGGGAGAAGAATCTGGGGGAAGACTTGGTCATGGAACTGATAGAGATTTTAGTCGCCCTCGTCTTGTTGAGTTTTTGGCAGTTACTAATATGGATTTTGTTGCTTGTGGAGAGAATCATACATGTGCTGTGTCTACATCTGATGATCTTTTCTCATGGGGTGATGGTACATACAATGCTGGACTTCTTGGACATGGAACCGATGTTAGCCATTGGATACCAAAGAAGGTTATTGGTCCTCTAGAAGGACTTCAAGTTATCTCTATAGCATGTGGCACATGGCATTCAGCACTAGCAACTTCTAATGGAAAACTCTTTACCTTTGGTGATGGAACATTTGGTGTGCTGGGTCATGGAAATAGACAAAGTGTGACATATCCAAAAGAGGTGCAGTTATTAAGTGGACTGAAAACTATTAAGGTTTCATGTGGAGTATGGCATACTGCAGCCATTGTAGAGGTTACTTTTCAATCTGGCTCGAATGTTTTATCCAGAAAGCTTTTCACTTGGGGAGATGGTGACAAATATCGTTTGGGACATGGAAATAAGGAAACATACCTTCAACCAACTTGTGTCTCTACACTTATTGAATATAATTTCCACCAAATAGCATGTGGACACACTATGACTGTTGCCCTAACTACATCTGGTCATGTCTTCACTATGGGAAACACTGAAAATGGTCAACTAGGAAATCCTTTTGCTGATGGAAAAGTACCAATCCTAGTGCAAGATAAGTTAGTGGGTGAATTTGTTGAGGAAGTATCGTGTGGATCTCATCATGTTGCGGCCTTAACATCAAGAAGCGAACTATATACATGGGGGAAAGGTGCTAATGGAAGATTGGGACATGGAGACATAGAAGATAGAAAGTCTCCAACACTAGTGGAAGCCTTGAAAGATAGACATGTAAAGAACATTTCATGTGGCTCAAACTTTACATCTTGCATATGCATTCATAAATGGGTCTCTGGAGTTGACCAATCTATATGCACTGGTTGTAGACTGCCATTTGGTTTCACTAGAAAGAGACATAATTGTTATAACTGTGGATTAGTGCATTGTCATGGTTGCAGTTCAAGAAAGGTACTAAAAGCAGCCTTAGCTCCAACACCAGGAAAACCCCATCGTGTGTGTGACTCTTGTTATAATAAGCTGAAAGCTGTTGAGGCATGTAGTAGTGCAAATCTTAATAGAAAAATCACTAGTACTATTTCTGCACCTCGCATTTCCATAGATTCCAGGGAAAGATTCGGCCAAGGAGAAATCAAATCTTCAAGACTCATTTTGCCTCCCATCACAGAACCAGTCAAATATCATCAAATGTTGACTAATAAGCTGGGAAGCAGATATGATTATCCTTCCCTCACTCCATCTTCCCAAATTCCATCACTTCTACAATTGAATGACATTGCATTTCCAAATTCAATCAGTTCCTCTCAAAATATTTTGAAGTCTGCTATATCTTCTAATCCACCACCAATTTCACCTACCCTTGCAAGACCATCATCTCCTGCAAGAAGGCCAAGCTCACCACGTTCTCGAACTCCAGGATTTTCTAGAAGTCTCCTTGAAAGTTTGAAGAAGACAAATGAACTTTTGAATCAAGAAGTTTCAAAGTTGCAAAACCAGATACGAAATTTGAAGCAGAAAAATGGCAAGGAAATTGAAAAGTTTCAGAAATATGTTAGTGAAGTTACCTCCTTAGCTGTAGAGGAATCTTCTAAACATAAATCTACGAGAGAGTTTTTTAAGTCCACCATAGATCAGTTGAAGGAAATGATGGAGAAGTTGCCACCAGAAGCTTTAGAAGGTGAAAATTGGAAAACAATACTTACTGCAGCTGAAGATTTTCTGAGAGATAATGTAGAATCTGAAACACCAGCCATGTCCTCAAGTGCCAATTTTGAACAACAAAATGTTCCTCATTCACTTGACTCAAATGATAATTCTTCTAAATTGCAAGAACAAAAAATAGAAGAAAATGCTGAAACTGAAGGAGATGAATCATCATCACGAGATGAAGCAAATGTTCTTCAAAAAACTAGCTCATCTTTATCAAACAATGACGCATCAATGTCTTCACAAAACTCTCTAAATTATTCAAAATCCCAAGTCTCCTCAAGATCAATTAAAGAAGGAGAAACACAAGTCATTGAACAATTTGAACCTGGCGTATATGTAACATTAATCGTAAAGCCTAATGGTGTCAAGGTTTTCAAACGGGTTAGATTCAGTAAACGAAGGTTCCATGAACATCAAGCAGAAGAATGGTGGAATGCAAACAAAGATAAGGTGCTTAAGAAATATAGTATTTTAGCAGCTACAAAATCTGAAGGTTCGGCGTCATCTAACACTCTACCACCACCTGCAGAAGAAAATAGTGTGGCAATCTCTTCCTAA 3141 0.3846 MADPASDGSLERDIEQILTGLKKGTQLIKYSRKTKPKVCPFKLSLDEKTLIWISSHKKERILKLSSVSQIISGQRTVVFRRYLQQENNYLSFSLIYNSRERTLELICKDKDETETWFRGLKTLISTEKFNRRIGSEFFYYRCGLERANMQPRTSIGDGFRVSVSSTPSVSSAGSGPDDIESLGDVYVWGEVWADGISPDGFVTQAPSTTDVLIPKPLESSVVLDVQQIASGMRHIALVTRQGEVFTWGEESGGRLGHGTDRDFSRPRLVEFLAVTNMDFVACGENHTCAVSTSDDLFSWGDGTYNAGLLGHGTDVSHWIPKKVIGPLEGLQVISIACGTWHSALATSNGKLFTFGDGTFGVLGHGNRQSVTYPKEVQLLSGLKTIKVSCGVWHTAAIVEVTFQSGSNVLSRKLFTWGDGDKYRLGHGNKETYLQPTCVSTLIEYNFHQIACGHTMTVALTTSGHVFTMGNTENGQLGNPFADGKVPILVQDKLVGEFVEEVSCGSHHVAALTSRSELYTWGKGANGRLGHGDIEDRKSPTLVEALKDRHVKNISCGSNFTSCICIHKWVSGVDQSICTGCRLPFGFTRKRHNCYNCGLVHCHGCSSRKVLKAALAPTPGKPHRVCDSCYNKLKAVEACSSANLNRKITSTISAPRISIDSRERFGQGEIKSSRLILPPITEPVKYHQMLTNKLGSRYDYPSLTPSSQIPSLLQLNDIAFPNSISSSQNILKSAISSNPPPISPTLARPSSPARRPSSPRSRTPGFSRSLLESLKKTNELLNQEVSKLQNQIRNLKQKNGKEIEKFQKYVSEVTSLAVEESSKHKSTREFFKSTIDQLKEMMEKLPPEALEGENWKTILTAAEDFLRDNVESETPAMSSSANFEQQNVPHSLDSNDNSSKLQEQKIEENAETEGDESSSRDEANVLQKTSSSLSNNDASMSSQNSLNYSKSQVSSRSIKEGETQVIEQFEPGVYVTLIVKPNGVKVFKRVRFSKRRFHEHQAEEWWNANKDKVLKKYSILAATKSEGSASSNTLPPPAEENSVAISS* 1047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0894 1046 CDD FYVE_like_SF 577 629 - -
Pvu8g0894 1046 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 515 566 IPR000408 -
Pvu8g0894 1046 SMART fyve_4 565 634 IPR000306 GO:0046872
Pvu8g0894 1046 Pfam Pleckstrin homology domain 15 124 IPR001849 -
Pvu8g0894 1046 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 387 397 IPR000408 -
Pvu8g0894 1046 Coils Coil 770 804 - -
Pvu8g0894 1046 Pfam Transcription factor BRX N-terminal domain 818 848 IPR027988 -
Pvu8g0894 1046 MobiDBLite consensus disorder prediction 749 766 - -
Pvu8g0894 1046 ProSiteProfiles BRX domain profile. 962 1017 IPR013591 -
Pvu8g0894 1046 Pfam Regulator of chromosome condensation (RCC1) repeat 295 344 IPR000408 -
Pvu8g0894 1046 Pfam Regulator of chromosome condensation (RCC1) repeat 348 397 IPR000408 -
Pvu8g0894 1046 Pfam Regulator of chromosome condensation (RCC1) repeat 413 459 IPR000408 -
Pvu8g0894 1046 Pfam Regulator of chromosome condensation (RCC1) repeat 242 290 IPR000408 -
Pvu8g0894 1046 Pfam Regulator of chromosome condensation (RCC1) repeat 462 511 IPR000408 -
Pvu8g0894 1046 Pfam Regulator of chromosome condensation (RCC1) repeat 516 563 IPR000408 -
Pvu8g0894 1046 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 463 514 IPR000408 -
Pvu8g0894 1046 PRINTS Chromosome condensation regulator RCC1 signature 224 237 IPR000408 -
Pvu8g0894 1046 PRINTS Chromosome condensation regulator RCC1 signature 294 310 IPR000408 -
Pvu8g0894 1046 PRINTS Chromosome condensation regulator RCC1 signature 335 351 IPR000408 -
Pvu8g0894 1046 PRINTS Chromosome condensation regulator RCC1 signature 351 365 IPR000408 -
Pvu8g0894 1046 PRINTS Chromosome condensation regulator RCC1 signature 452 470 IPR000408 -
Pvu8g0894 1046 PRINTS Chromosome condensation regulator RCC1 signature 510 531 IPR000408 -
Pvu8g0894 1046 SUPERFAMILY RCC1/BLIP-II 183 568 IPR009091 -
Pvu8g0894 1046 Pfam Transcription factor regulating root and shoot growth via Pin3 962 1016 IPR013591 -
Pvu8g0894 1046 MobiDBLite consensus disorder prediction 871 898 - -
Pvu8g0894 1046 Gene3D - 160 404 IPR009091 -
Pvu8g0894 1046 Gene3D - 405 577 IPR009091 -
Pvu8g0894 1046 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 578 639 IPR013083 -
Pvu8g0894 1046 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 14 1016 - -
Pvu8g0894 1046 SUPERFAMILY FYVE/PHD zinc finger 567 637 IPR011011 -
Pvu8g0894 1046 CDD PH_PLC_plant-like 12 125 - -
Pvu8g0894 1046 MobiDBLite consensus disorder prediction 1024 1046 - -
Pvu8g0894 1046 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 294 348 IPR000408 -
Pvu8g0894 1046 SUPERFAMILY PH domain-like 14 124 - -
Pvu8g0894 1046 MobiDBLite consensus disorder prediction 870 952 - -
Pvu8g0894 1046 ProSiteProfiles PH domain profile. 92 125 IPR001849 -
Pvu8g0894 1046 MobiDBLite consensus disorder prediction 922 952 - -
Pvu8g0894 1046 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 14 1016 - -
Pvu8g0894 1046 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 228 238 IPR000408 -
Pvu8g0894 1046 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 349 400 IPR000408 -
Pvu8g0894 1046 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 411 462 IPR000408 -
Pvu8g0894 1046 MobiDBLite consensus disorder prediction 899 921 - -
Pvu8g0894 1046 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 571 633 IPR017455 -
Pvu8g0894 1046 MobiDBLite consensus disorder prediction 733 766 - -
Pvu8g0894 1046 Pfam FYVE zinc finger 567 633 IPR000306 GO:0046872
Pvu8g0894 1046 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 242 293 IPR000408 -
Pvu8g0894 1046 Gene3D - 13 132 IPR011993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0894 Pvu-Chr8 8762584 8772471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0894 959 1018 Major Intrinsic Protein MIP AT1G31880 38.333 2.39e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0894 - - gmx:100779684 1605.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0894 8 8762584 8772471 Pvu10g0635 10 10054655 10059747 PCT