Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0888 ATGGCTTTTAGGGACAAAAGAATAGCGTCTCTGGAACAGACTTTGCAACAACTTCGCGATGTCACAAACTCCACTGCTCTGAACAAAGCCTCAATCATTGTAGATGCCTCAAAATACATAGAGGAGTTGAAACAAAAGGTGGAGGGACTGAACTCGGAGCTGGGGATCACGGAATCATCATCAAACTCTCAAATTGATGAACTACCAACGGTAACGGTGAAAACCCTAAAAAAGGGTTTCCTCATTAATGTGCTTTTAGAGAAGAATAGCCCTGGTATGCTCGTGTCCATACTCGAAGCCTTCGAAGAACTTGGTCTTGATGTGCTTGATGCTAGGGTTTCTTGTGAAGACAGTTTCCAGCTAGAAGCCGTGGGAAGAGAAAGTCACAAGAACGACAGTGTTGACGCGCAAGTGGTAAAGCAAGCAGTGTTGCGAGCAATCAAGAACGAGGACTAA 456 0.4474 MAFRDKRIASLEQTLQQLRDVTNSTALNKASIIVDASKYIEELKQKVEGLNSELGITESSSNSQIDELPTVTVKTLKKGFLINVLLEKNSPGMLVSILEAFEELGLDVLDARVSCEDSFQLEAVGRESHKNDSVDAQVVKQAVLRAIKNED* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0888 151 ProSiteProfiles ACT domain profile. 82 151 IPR002912 -
Pvu8g0888 151 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 4 150 - -
Pvu8g0888 151 CDD ACT_UUR-ACR-like 88 147 - -
Pvu8g0888 151 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 4 150 - -
Pvu8g0888 151 Gene3D - 5 59 IPR036638 GO:0046983
Pvu8g0888 151 Coils Coil 33 60 - -
Pvu8g0888 151 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 6 58 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0888 Pvu-Chr8 8681290 8683120 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0888 25 145 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 28.777 2.00e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0888 - - vra:106759069 267.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0888 8 8681290 8683120 Pvu8g0888 8 8681290 8683120 ECH
Pvu8g0888 8 8681290 8683120 Pvu1g2565 1 50661012 50662813 ECH
Pvu8g0888 8 8681290 8683120 Pvu8g2266 8 53155693 53159073 ECH
Pvu6g0789 6 19457795 19460226 Pvu8g0888 8 8681290 8683120 ECH
Pvu8g0888 8 8681290 8683120 Pvu6g0789 6 19457795 19460226 ECH