Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0874 GTTTGTGTTGGAGCAAGTACGGTCTCTATATCAAATGTTTCACCCCATGAATATACATCATTTAAGGATAATGGAGAATCTGCTTATGAGTTTTCTACACTAACCACTCAACCTATTTCCCCTAATGTATTTTGTTACAATCACGCTCCTACTCCTTCCATGGTTCATGCCATATCACCAAACCCTATTATATCCGAACATGTTCCGTCTGGTTGGGTTCAAATTCCTAACGATTCAAATCACTCAACACCTCCCGTATCGAAGTCACATCACAAGCGTTATGAGCGTTGGACAGAAAATGAACATAGGTTATTTCTTATTGGACTTCAAAAGTGTAGCCCAGGAGATTGGAAAAACATTTCAAAATGTTACATTCCATCAAAAACTTCAACTCAAATTGCAAGTCACGCTCAAAAGTATATGCTTCATCAAAATGGCCTAAAGAAAAATAAGAAGAGAAAAAGTATCCACGACGTAACCCTAGATAACATTAACACGGGTGTTGTTCCTAGTTTCATTAATTAA 525 0.3714 VCVGASTVSISNVSPHEYTSFKDNGESAYEFSTLTTQPISPNVFCYNHAPTPSMVHAISPNPIISEHVPSGWVQIPNDSNHSTPPVSKSHHKRYERWTENEHRLFLIGLQKCSPGDWKNISKCYIPSKTSTQIASHAQKYMLHQNGLKKNKKRKSIHDVTLDNINTGVVPSFIN* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0874 174 Pfam Myb-like DNA-binding domain 96 140 IPR001005 -
Pvu8g0874 174 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 89 145 IPR017930 -
Pvu8g0874 174 CDD SANT 96 141 IPR001005 -
Pvu8g0874 174 Coils Coil 173 174 - -
Pvu8g0874 174 Gene3D - 96 145 - -
Pvu8g0874 174 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 66 165 IPR043363 -
Pvu8g0874 174 SUPERFAMILY Homeodomain-like 91 145 IPR009057 -
Pvu8g0874 174 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 66 165 - -
Pvu8g0874 174 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 92 144 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0874 Pvu-Chr8 8503670 8504482 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Pvu8g0874 Myb_DNA-binding 3.8e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0874 - - pvu:PHAVU_008G085800g 369.392