Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pvu8g0870 ATGGCTTCATTTCCTTCAAATTCTGCATCAGAACATAGCATGGCCGGTGCCCAAAACAGCCATCCTCAAGCTTCTTCACCTTCTTTCATGACTAGAGTGGCCATGAGAGTATCTAGATCAAGATGGTTCACCTTCTTGAGAAGAGTATTCCATTACCAAAATGGACCAAGATCTGATCTTGGTTCCAACCCCTTCAATTCTAGCACTTGGATGATGCTGGAGTTGATTGCTTTAGTGCTCCAGATAACAATCACAACACTCACTTTGGCCATTTCAAAGAGTGAGAAGCCTATTTGGCCTATGAGGGTGTGGCTAGCAGGTTATGATATTGGGTGTGTCCTTAATCTGCTGCTACTTTGTGGCCGCTACTATCAACTCCATGTGACTCAAGGAGGTGGTCTGAACCTTTCTGATTTGGAACAGCAGAGAAACAATGAAGAATCAAGTGTGTTGAGGAGCTCACACTTGATGGACAAATGCAGAAGTTCACTAGAGCTTTTCTTTGCCATATGGTTTGTGATGGGCAATGTTTGGGCCTTTGACTCACGTTTAGGGTCATTCCAACAAGCTCCTAAACTGCAGGTGTTATGCATGATCCTACTTGGCTGGAATGCAATATGCTACTCTTTCCCTTTTCTTCTGTTTTTGCTGTTGTGTTGTTGTGTGCCATTGATGAGCACCCTCCTTGGATACAACATGAGCATGGGCTCCTCTGCTAGAGGGGCATCAGATGATCAAATCTCAGAAATCCCAAGTTGGAGATACAAAGGTGCTCACACCAACTTGGACTTTGCCAATGACTCTCAAACCACTCAAAGATTGATCAATGATGATCCAGAATGCTGCATTTGCTTGGCCAAGTACAAAGACAAAGAAGAAGTGAGGCAATTACCTTGTTCCCATTTGTTCCACCTAAAATGTGTGGATCAATGGCTAAGAATCATATCATGTTGCCCCCTTTGTAAACAAGGATTACAAAGGTAG 984 0.435 MASFPSNSASEHSMAGAQNSHPQASSPSFMTRVAMRVSRSRWFTFLRRVFHYQNGPRSDLGSNPFNSSTWMMLELIALVLQITITTLTLAISKSEKPIWPMRVWLAGYDIGCVLNLLLLCGRYYQLHVTQGGGLNLSDLEQQRNNEESSVLRSSHLMDKCRSSLELFFAIWFVMGNVWAFDSRLGSFQQAPKLQVLCMILLGWNAICYSFPFLLFLLLCCCVPLMSTLLGYNMSMGSSARGASDDQISEIPSWRYKGAHTNLDFANDSQTTQRLINDDPECCICLAKYKDKEEVRQLPCSHLFHLKCVDQWLRIISCCPLCKQGLQR* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pvu8g0870 327 CDD RING-H2_RNF111_like 279 322 - -
Pvu8g0870 327 SUPERFAMILY RING/U-box 271 325 - -
Pvu8g0870 327 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 8 326 - -
Pvu8g0870 327 SMART ring_2 281 321 IPR001841 -
Pvu8g0870 327 Pfam RING-like zinc finger 280 308 IPR001841 -
Pvu8g0870 327 MobiDBLite consensus disorder prediction 1 27 - -
Pvu8g0870 327 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 326 - -
Pvu8g0870 327 ProSiteProfiles Zinc finger RING-type profile. 281 322 IPR001841 -
Pvu8g0870 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 231 326 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pvu8g0870 Pvu-Chr8 8475131 8478282 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pvu8g0870 29 325 C3H Transcription Factor Family AT4G26580 67.677 1.72e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pvu8g0870 - - gmx:100818715 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pvu8g0870 8 8475131 8478282 Pvu8g0870 8 8475131 8478282 ECH